RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 PRRT2Q7Z6L0 340 aaPredicted RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 SIAH1Q8IUQ4 282 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 GUF1Q8N442 669 aaKnown RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 TRIM9Q9C026 710 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 GPBP1L1Q9HC44 474 aaPredicted RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 SLC9A2Q9UBY0 812 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 KIF13BQ9NQT8 1826 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 PPP2R5CQ13362 524 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 SYCP1Q15431 976 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 DDX12PQ92771 950 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 PDCD2LQ9BRP1 358 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 NOC4LQ9BVI4 516 aaKnown RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 SPC25Q9HBM1 224 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 PPP1R11O60927 126 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 ZNF157P51786 506 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 NCBP1Q09161 790 aaKnown RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 RRP1BQ14684 758 aaKnown RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 NAALADL2Q58DX5 795 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 SEPT14Q6ZU15 432 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 ANKRD23Q86SG2 305 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 DYDC2Q96IM9 177 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 NUCKS1Q9H1E3 243 aaKnown RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 ASCC2Q9H1I8 757 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 DEF6Q9H4E7 631 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 JPH1Q9HDC5 661 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 ANKEF1Q9NU02 776 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 SPDYE16A6NNV3 312 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 KCNJ18B7U540 433 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 STRNO43815 780 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 N4BP1O75113 896 aaKnown RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 CDC25AP30304 524 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 UBXN1Q04323 297 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 KCNJ12Q14500 433 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 DDX60LQ5H9U9 1706 aaKnown RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 GLG1Q92896 1179 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 TAAR1Q96RJ0 339 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 NAA15Q9BXJ9 866 aaKnown RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 KBTBD4Q9NVX7 518 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 ZNF215Q9UL58 517 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 FAM184BQ9ULE4 1060 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 ASTN2O75129 1339 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 POTEB3A0JP26 581 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 POTECB2RU33 542 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 MEIS1O00470 390 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 HOXC6P09630 235 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 SP4Q02446 784 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 TFDP1Q14186 410 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 PGM5Q15124 567 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 TMEM119Q4V9L6 283 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 MAP1SQ66K74 1059 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 PDXDC2PQ6P474 469 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 POTEBQ6S5H4 581 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.26□□□□□ -0.93
USP54-215ENST00000497106 GRAMD1CQ8IYS0 662 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 KIFAP3Q92845 792 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 WNK4Q96J92 1243 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 CEP63Q96MT8 703 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 MBOAT7Q96N66 472 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 FUCA2Q9BTY2 467 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 KCNH7Q9NS40 1196 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 KCNH4Q9UQ05 1017 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 ZKSCAN5Q9Y2L8 839 aa9.26□□□□□ -0.93
USP54-215ENST00000497106 MYH8P13535 1937 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 NFIBO00712 420 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 ALDH1A1P00352 501 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 TRIM21P19474 475 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 REM2Q8IYK8 340 aaPredicted RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 C4orf32Q8N8J7 132 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 TCP11Q8WWU5 503 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 ACCSQ96QU6 501 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 LXNQ9BS40 222 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 PRR29P0C7W0 189 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 TGFB3P10600 412 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 TCERG1LQ5VWI1 586 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 SLC7A3Q8WY07 619 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 SRRTQ9BXP5 876 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 BHMT2Q9H2M3 363 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 CCDC169A6NNP5 214 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 POLGP54098 1239 aaPredicted RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 HIRAP54198 1017 aaPredicted RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 SNRPFP62306 86 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 FKBP3Q00688 224 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 GRB10Q13322 594 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 VWA3BQ502W6 1294 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 CCDC186Q7Z3E2 898 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 SH3RF1Q7Z6J0 888 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 ZBTB8OSQ8IWT0 167 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 SMC1BQ8NDV3 1235 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 NEK11Q8NG66 645 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 IPO4Q8TEX9 1081 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 ZNF526Q8TF50 670 aaPredicted RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 ERCC4Q92889 916 aaPredicted RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 MOV10L1Q9BXT6 1211 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 AGO4Q9HCK5 861 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 PP2D1A8MPX8 630 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 K7ENM7 598 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 EGFRP00533 1210 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 COASYQ13057 564 aa9.25□□□□□ -0.93
USP54-215ENST00000497106 CTTNQ14247 550 aaKnown RBP9.25□□□□□ -0.93
USP54-215ENST00000497106 ODR4Q5SWX8 454 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms