RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PAN2Q504Q3 1202 aaKnown RBP6.68□□□□□ -1.34
VPS50-219ENST00000495039 CLEC4DQ8WXI8 215 aa6.68□□□□□ -1.34
VPS50-219ENST00000495039 KCTD13Q8WZ19 329 aa6.68□□□□□ -1.34
VPS50-219ENST00000495039 JAM3Q9BX67 310 aa6.68□□□□□ -1.34
VPS50-219ENST00000495039 KATNBL1Q9H079 304 aa6.68□□□□□ -1.34
VPS50-219ENST00000495039 ARHGAP20Q9P2F6 1191 aa6.68□□□□□ -1.34
VPS50-219ENST00000495039 AGRPO00253 132 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 ENO2P09104 434 aaPredicted RBP6.67□□□□□ -1.34
VPS50-219ENST00000495039 FAHP16930 419 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 ATF4P18848 351 aaPredicted RBP6.67□□□□□ -1.34
VPS50-219ENST00000495039 COMTP21964 271 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 GLRBP48167 497 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 KRTAP1-1Q07627 177 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 ABHD18Q0P651 414 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 NRN1LQ496H8 165 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 TAX1BP1Q86VP1 789 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 STPG3Q8N7X2 389 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 EDAQ92838 391 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 EPN3Q9H201 632 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 ACBD3Q9H3P7 528 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 KCND1Q9NSA2 647 aa6.67□□□□□ -1.34
VPS50-219ENST00000495039 H0Y858 1186 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 TUSC3Q13454 348 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 USP10Q14694 798 aaKnown RBP6.66□□□□□ -1.34
VPS50-219ENST00000495039 FXNQ16595 210 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 OTOP3Q7RTS5 596 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 UHMK1Q8TAS1 419 aaKnown RBP6.66□□□□□ -1.34
VPS50-219ENST00000495039 ZNF503Q96F45 646 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 NEIL1Q96FI4 390 aaPredicted RBP6.66□□□□□ -1.34
VPS50-219ENST00000495039 CCSER2Q9H7U1 834 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 MRVI1Q9Y6F6 885 aa6.66□□□□□ -1.34
VPS50-219ENST00000495039 ZNF202O95125 648 aa6.65□□□□□ -1.34
VPS50-219ENST00000495039 CAPNS1P04632 268 aa6.65□□□□□ -1.34
VPS50-219ENST00000495039 PURAQ00577 322 aaKnown RBP6.65□□□□□ -1.34
VPS50-219ENST00000495039 USP39Q53GS9 565 aaKnown RBP6.65□□□□□ -1.34
VPS50-219ENST00000495039 CD276Q5ZPR3 534 aa6.65□□□□□ -1.34
VPS50-219ENST00000495039 MRM1Q6IN84 353 aaKnown RBP6.65□□□□□ -1.34
VPS50-219ENST00000495039 RSPO2Q6UXX9 243 aaPredicted RBP6.65□□□□□ -1.34
VPS50-219ENST00000495039 EEPD1Q7L9B9 569 aa6.65□□□□□ -1.34
VPS50-219ENST00000495039 PHF20Q9BVI0 1012 aa6.65□□□□□ -1.34
VPS50-219ENST00000495039 PDGFDQ9GZP0 370 aaPredicted RBP6.65□□□□□ -1.34
VPS50-219ENST00000495039 CSRNP2Q9H175 543 aa6.65□□□□□ -1.34
VPS50-219ENST00000495039 PPARGC1AQ9UBK2 798 aaKnown RBP6.65□□□□□ -1.34
VPS50-219ENST00000495039 WDR33Q9C0J8 1336 aaKnown RBP6.65□□□□□ -1.35
VPS50-219ENST00000495039 MSCO60682 206 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 SSBP05455 408 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS50-219ENST00000495039 RAC3P60763 192 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 PPP2R2AP63151 447 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 PFKPQ01813 784 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 SPIRE1Q08AE8 756 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 RBM12BQ8IXT5 1001 aaKnown RBP6.64□□□□□ -1.35
VPS50-219ENST00000495039 FUKQ8N0W3 1084 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 CARD11Q9BXL7 1154 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 C11orf21Q9P2W6 132 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 PRKAG3Q9UGI9 489 aa6.64□□□□□ -1.35
VPS50-219ENST00000495039 ZNF839A8K0R7 811 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 RAD17O75943 681 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 LTFP02788 710 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 ZNF888P0CJ79 500 aaPredicted RBP6.63□□□□□ -1.35
VPS50-219ENST00000495039 GNAT1P11488 350 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 GRK2P25098 689 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 GRK3P35626 688 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 GRIA2P42262 883 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 MFAP1P55081 439 aaKnown RBP6.63□□□□□ -1.35
VPS50-219ENST00000495039 PTH1RQ03431 593 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 SLC10A6Q3KNW5 377 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 AGBL4Q5VU57 503 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 USP53Q70EK8 1073 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.63□□□□□ -1.35
VPS50-219ENST00000495039 IER2Q9BTL4 223 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 CAPN10Q9HC96 672 aa6.63□□□□□ -1.35
VPS50-219ENST00000495039 CUTAO60888 179 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 MCM7P33993 719 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 SMN1Q16637 294 aaKnown RBP6.62□□□□□ -1.35
VPS50-219ENST00000495039 KIZQ2M2Z5 673 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 AMER2Q8N7J2 671 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 CHFRQ96EP1 664 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 TACO1Q9BSH4 297 aaKnown RBP6.62□□□□□ -1.35
VPS50-219ENST00000495039 OAZ3Q9UMX2 235 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 PTPN22Q9Y2R2 807 aa6.62□□□□□ -1.35
VPS50-219ENST00000495039 DLX3O60479 287 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 IL18BPO95998 194 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 COL6A2P12110 1019 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 POLD1P28340 1107 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 INHBEP58166 350 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 IGFL4Q6B9Z1 124 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 POLNQ7Z5Q5 900 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 VPS37DQ86XT2 251 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 MICAL1Q8TDZ2 1067 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 EXTL1Q92935 676 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 MRRFQ96E11 262 aaKnown RBP6.61□□□□□ -1.35
VPS50-219ENST00000495039 DSEQ9UL01 958 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 TELO2Q9Y4R8 837 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 SLC30A1Q9Y6M5 507 aa6.61□□□□□ -1.35
VPS50-219ENST00000495039 A0A1W2PQU0 124 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 NARSO43776 548 aaKnown RBP6.6□□□□□ -1.35
VPS50-219ENST00000495039 GJB6O95452 261 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 CR2P20023 1033 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 ACO1P21399 889 aaKnown RBP6.6□□□□□ -1.35
VPS50-219ENST00000495039 EPHA5P54756 1037 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms