RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PALM3A6NDB9 673 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CETN3O15182 167 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 EXOC3O60645 756 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PLA2G4BP0C869 781 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 BMP6P22004 513 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZNF658Q5TYW1 1059 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NCAPG2Q86XI2 1143 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RTKN2Q8IZC4 609 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IRAK4Q9NWZ3 460 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZNF142P52746 1687 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GOLGA8KD6RF30 607 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IKBKBO14920 756 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PPP1R12AO14974 1030 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CXCL9Q07325 125 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MTMR2Q13614 643 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ODR4Q5SWX8 454 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FAM102BQ5T8I3 360 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FOXR1Q6PIV2 292 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MIER3Q7Z3K6 550 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ANKRD35Q8N283 1001 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SH2D4AQ9H788 454 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CNOT7Q9UIV1 285 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 H3BQF6 201 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SEPT14Q6ZU15 432 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TMTC1Q8IUR5 882 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TMOD4Q9NZQ9 345 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 COL1A1P02452 1464 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CLTAP09496 248 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ABCB4P21439 1286 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NR2F2P24468 414 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PCK1P35558 622 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KCTD19Q17RG1 926 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 P2RX5Q93086 422 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SUGCTQ9HAC7 445 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RABGAP1Q9Y3P9 1069 aa11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PHRF1Q9P1Y6 1649 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TRPM3Q9HCF6 1732 aaPredicted RBP11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SCN11AQ9UI33 1791 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GOLGA8IPA6NC78 632 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GOLGA8JA6NMD2 632 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 XKR9Q5GH70 373 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SAAL1Q96ER3 474 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LSM14BQ9BX40 385 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PRR12Q9ULL5 1215 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MRFAP1Q9Y605 127 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PLEKHG2Q9H7P9 1386 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZBED4O75132 1171 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ANGEL2Q5VTE6 544 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LRRC31Q6UY01 552 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ADAT2Q7Z6V5 191 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CALR3Q96L12 384 aaKnown RBP11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ALS2Q96Q42 1657 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LRRN2O75325 713 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SASH3O75995 380 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SCP2P22307 547 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GMPSP49915 693 aaPredicted RBP11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KRT26Q7Z3Y9 468 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FAM178BQ8IXR5 827 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZNRF3Q9ULT6 936 aa11.75□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZBTB39O15060 712 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PEX10O60683 326 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IRX1P78414 480 aaPredicted RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PDCLQ13371 301 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TNFAIP1Q13829 316 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ANKRD40Q6AI12 368 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GALNT17Q6IS24 598 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 C8orf74Q6P047 294 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RSBN1LQ6PCB5 846 aaPredicted RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CYP26C1Q6V0L0 522 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PHLDB2Q86SQ0 1253 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TRIML1Q8N9V2 468 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GLIS3Q8NEA6 775 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 OR8K1Q8NGG5 319 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CHP1Q99653 195 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PHLPP1O60346 1717 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MYMKA6NI61 221 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZRANB2O95218 330 aaKnown RBP eCLIP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 DLATP10515 647 aaKnown RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ERCC5P28715 1186 aaPredicted RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FXR1P51114 621 aaKnown RBP eCLIP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 VSNL1P62760 191 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TCP11X2Q5H9J9 407 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 DACT2Q5SW24 774 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SUGP1Q8IWZ8 645 aaKnown RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RPUSD2Q8IZ73 545 aaKnown RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SPDL1Q96EA4 605 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PURBQ96QR8 312 aaKnown RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SPZ1Q9BXG8 430 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LRRC27Q9C0I9 530 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TRIM10Q9UDY6 481 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FAM198AQ9UFP1 575 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 HPSEQ9Y251 543 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TAF1P21675 1872 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MARK3P27448 753 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PMS1P54277 932 aaKnown RBP11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 HHIPL2Q6UWX4 724 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 DNAAF5Q86Y56 855 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SULF1Q8IWU6 871 aa11.74□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TRIM9Q9C026 710 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms