RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MICALL2Q8IY33 904 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 ZNF397Q8NF99 534 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 LPAR1Q92633 364 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 KIAA1683Q9H0B3 1180 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 TUFT1Q9NNX1 390 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 ZNHIT6Q9NWK9 470 aaKnown RBP23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 RABGAP1Q9Y3P9 1069 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 TADA3O75528 432 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 CASP5P51878 434 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 SFR1Q86XK3 245 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 RUSC1Q9BVN2 902 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 EPHB6O15197 1021 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 ERCC3P19447 782 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 HERVK_113P62684 666 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 CTTNQ14247 550 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 CCDC40Q4G0X9 1142 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 SAMD7Q7Z3H4 446 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 PRPF38AQ8NAV1 312 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 CCDC94Q9BW85 323 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 GINM1Q9NU53 330 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 CHMP2AO43633 222 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 SLITRK3O94933 977 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 GNA14O95837 355 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 PRELPP51888 382 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 MARSP56192 900 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 CDK17Q00537 523 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 PPP4R3CPQ6ZMV5 832 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 EPM2AIP1Q7L775 607 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 HOOK2Q96ED9 719 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 DYDC2Q96IM9 177 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 ZFP91Q96JP5 570 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 FAM207AQ9NSI2 230 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 BCS1LQ9Y276 419 aa23.35■■□□□ 1.33
CCDC88B-208ENST00000492980 LTBP3Q9NS15 1303 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 CTNND1O60716 968 aaKnown RBP23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 GAS7O60861 476 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 ARP10275 920 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 HNRNPH3P31942 346 aaKnown RBP23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 SETQ01105 290 aaPredicted RBP23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 DGKZQ13574 1117 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 EDRF1Q3B7T1 1238 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 SLC35F6Q8N357 371 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 CLEC4DQ8WXI8 215 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 ARID3AQ99856 593 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 NHEJ1Q9H9Q4 299 aaPredicted RBP23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 MYO1AQ9UBC5 1043 aa23.34■■□□□ 1.33
CCDC88B-208ENST00000492980 RSPH10B2B2RC85 870 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 RSPH10BP0C881 870 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 RASSF7Q02833 373 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 TBC1D10BQ4KMP7 808 aaPredicted RBP23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 CCDC170Q8IYT3 715 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 ZNF577Q9BSK1 485 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 MMRN2Q9H8L6 949 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 COL20A1Q9P218 1284 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 HACL1Q9UJ83 578 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 RPTORQ8N122 1335 aa23.33■■□□□ 1.33
CCDC88B-208ENST00000492980 EFCAB8A8MWE9 144 aa23.33■■□□□ 1.32
CCDC88B-208ENST00000492980 NFIBO00712 420 aa23.33■■□□□ 1.32
CCDC88B-208ENST00000492980 CYLC1P35663 651 aaPredicted RBP23.33■■□□□ 1.32
CCDC88B-208ENST00000492980 PPP2R3AQ06190 1150 aa23.33■■□□□ 1.32
CCDC88B-208ENST00000492980 TRIM59Q8IWR1 403 aa23.33■■□□□ 1.32
CCDC88B-208ENST00000492980 TANGO6Q9C0B7 1094 aa23.33■■□□□ 1.32
CCDC88B-208ENST00000492980 HOXD13P35453 343 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 RINT1Q6NUQ1 792 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 FBXO38Q6PIJ6 1188 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 TPH2Q8IWU9 490 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 CCDC155Q8N6L0 562 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 PIGOQ8TEQ8 1089 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 MXRA8Q9BRK3 442 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 WDR11Q9BZH6 1224 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 UNC45AQ9H3U1 944 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 CNOT7Q9UIV1 285 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 PLAGL2Q9UPG8 496 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 DOCK1Q14185 1865 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 EIF3CLB5ME19 914 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 MYBP10242 640 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 KRT83P78385 493 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 GHRHRQ02643 423 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 KCNMA1Q12791 1236 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 B3GNT9Q6UX72 402 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 UBXN4Q92575 508 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 EIF3CQ99613 913 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 TRIM10Q9UDY6 481 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 TRAF3IP3Q9Y228 551 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 GJA3Q9Y6H8 435 aa23.32■■□□□ 1.32
CCDC88B-208ENST00000492980 CTAGE9A4FU28 777 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 FZD9O00144 591 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 TBCAO75347 108 aaKnown RBP23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 ADAM9Q13443 819 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 KNOP1Q1ED39 458 aaKnown RBP23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 BMT2Q1RMZ1 405 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 ZNF662Q6ZS27 426 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 SMCR8Q8TEV9 937 aaPredicted RBP23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 HAUS4Q9H6D7 363 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 SLC38A10Q9HBR0 1119 aa23.31■■□□□ 1.32
CCDC88B-208ENST00000492980 MUTP22033 750 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 BAP1Q92560 729 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 TEKT3Q9BXF9 490 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 BCAS3Q9H6U6 928 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 IPO5O00410 1097 aaKnown RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms