RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 ERBB2P04626 1255 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 CYP2C8P10632 490 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 GFRA1P56159 465 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 FOXE3Q13461 319 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 MROH9Q5TGP6 573 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 PPIL6Q8IXY8 311 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 LINC00482Q8N8I6 264 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 ARMC5Q96C12 935 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 TMEM169Q96HH4 297 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 CHAMP1Q96JM3 812 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 IFT57Q9NWB7 429 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 CHPF2Q9P2E5 772 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 ZFR2Q9UPR6 939 aaKnown RBP4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 PCDHA2Q9Y5H9 948 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 COL4A3BPQ9Y5P4 624 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 X6R8D5 127 aa4.38□□□□□ -1.71
DEPDC1-204ENST00000489862 NPEPPSL1A6NEC2 478 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 LAMTOR5O43504 91 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 MYO1BO43795 1136 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 ZNF202O95125 648 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 CPP00450 1065 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 CAPNS1P04632 268 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 SLC6A11P48066 632 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 GTF2A2P52657 109 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 KCNAB2Q13303 367 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 SLC10A6Q3KNW5 377 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 RGL3Q3MIN7 710 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 EEPD1Q7L9B9 569 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 PLEKHH3Q7Z736 793 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 CIR1Q86X95 450 aaPredicted RBP4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 TICAM2Q86XR7 235 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 MIB1Q86YT6 1006 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 RIOX2Q8IUF8 465 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 Q8N1Y9 231 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 C1orf159Q96HA4 380 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 CCDC140Q96MF4 163 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 C11orf84Q9BUA3 381 aaPredicted RBP4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 PCDH12Q9NPG4 1184 aa4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 G3BP2Q9UN86 482 aaKnown RBP4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 NOP58Q9Y2X3 529 aaKnown RBP4.37□□□□□ -1.71
DEPDC1-204ENST00000489862 A0A1W2PQU0 124 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 MROH6A6NGR9 719 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 LTBRP36941 435 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 STAT5AP42229 794 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 PPP2R2AP63151 447 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 PLEKHG6Q3KR16 790 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 ACBD5Q5T8D3 534 aaPredicted RBP4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 ANKS3Q6ZW76 656 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 GLCCI1Q86VQ1 547 aa4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 R3HCC1Q9Y3T6 440 aaKnown RBP4.36□□□□□ -1.71
DEPDC1-204ENST00000489862 LSAMPQ13449 338 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 TESK1Q15569 626 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 MIIPQ5JXC2 388 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 SLC35F1Q5T1Q4 408 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 FILIP1Q7Z7B0 1213 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 FAM126BQ8IXS8 530 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 KYQ8NBH2 561 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 DNERQ8NFT8 737 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 PMM1Q92871 262 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 RNPC3Q96LT9 517 aaKnown RBP4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 COA3Q9Y2R0 106 aaPredicted RBP4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 CCDC194A0A1B0GVG4 234 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 AGRPO00253 132 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 HSD3B2P26439 372 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 THBS2P35442 1172 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 ITGA1P56199 1179 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 RBM10P98175 930 aaKnown RBP4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 AMPD3Q01432 767 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 SERINC3Q13530 473 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 R3HDM1Q15032 1099 aaKnown RBP4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 DDR2Q16832 855 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 CR1LQ2VPA4 569 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 FAM26FQ5R3K3 315 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 RAVER1Q8IY67 606 aaKnown RBP4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 ARRDC4Q8NCT1 418 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 IER2Q9BTL4 223 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 EPN3Q9H201 632 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 METTL14Q9HCE5 456 aaKnown RBP4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 CLDND1Q9NY35 253 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 NPFFR2Q9Y5X5 522 aa4.35□□□□□ -1.71
DEPDC1-204ENST00000489862 H7BY64 318 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 HGSO14964 777 aaPredicted RBP4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 KLF4O43474 513 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 DLX3O60479 287 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 MSCO60682 206 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 RPL13P26373 211 aaKnown RBP4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 STEAP3Q658P3 488 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 ZC3H18Q86VM9 953 aaKnown RBP4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 KCTD13Q8WZ19 329 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 YIPF4Q9BSR8 244 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 CDIP1Q9H305 208 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 MYH16Q9H6N6 1097 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 PPP4R1LQ9P1A2 415 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 ZNF652Q9Y2D9 606 aa4.34□□□□□ -1.71
DEPDC1-204ENST00000489862 TCRBV5S2A0A599 114 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 TADA3O75528 432 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 ANAPC15P60006 121 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 MAP4K2Q12851 820 aa4.33□□□□□ -1.72
DEPDC1-204ENST00000489862 CCDC142Q17RM4 750 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms