RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 CYFIP1Q7L576 1253 aa21.81■■□□□ 1.08
CCM2-216ENST00000488727 DHX37Q8IY37 1157 aaKnown RBP21.81■■□□□ 1.08
CCM2-216ENST00000488727 TMEM106CQ9BVX2 250 aa21.81■■□□□ 1.08
CCM2-216ENST00000488727 UPF3AQ9H1J1 476 aaKnown RBP21.81■■□□□ 1.08
CCM2-216ENST00000488727 KCNMB3Q9NPA1 279 aa21.81■■□□□ 1.08
CCM2-216ENST00000488727 POLR3EQ9NVU0 708 aa21.81■■□□□ 1.08
CCM2-216ENST00000488727 DHX15O43143 795 aaKnown RBP21.8■■□□□ 1.08
CCM2-216ENST00000488727 GJA8P48165 433 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 CAMK4Q16566 473 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 OR6J1Q8NGC5 347 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 HAS1Q92839 578 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 FTOQ9C0B1 505 aaKnown RBP eCLIP21.8■■□□□ 1.08
CCM2-216ENST00000488727 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.8■■□□□ 1.08
CCM2-216ENST00000488727 OGDHLQ9ULD0 1010 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 A0A1W2PQ27 194 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 A0A1W2PQ64 194 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 A0A1W2PQD8 194 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 ZNF500O60304 480 aaPredicted RBP21.8■■□□□ 1.08
CCM2-216ENST00000488727 NEMFO60524 1076 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 METTL7BQ6UX53 244 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 SLC5A5Q92911 643 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 EMID1Q96A84 441 aaPredicted RBP21.8■■□□□ 1.08
CCM2-216ENST00000488727 TMEM60Q9H2L4 133 aa21.8■■□□□ 1.08
CCM2-216ENST00000488727 NFASCO94856 1347 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 ADCY5O95622 1261 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 CAVIN2O95810 425 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 C6orf222P0C671 652 aaPredicted RBP21.79■■□□□ 1.08
CCM2-216ENST00000488727 NKX3-2P78367 333 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 BEX3Q00994 111 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 CEBPZQ03701 1054 aaKnown RBP21.79■■□□□ 1.08
CCM2-216ENST00000488727 HSDL1Q3SXM5 330 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 CCDC73Q6ZRK6 1079 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 AP5M1Q9H0R1 490 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 MLXIPQ9HAP2 919 aa21.79■■□□□ 1.08
CCM2-216ENST00000488727 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.79■■□□□ 1.08
CCM2-216ENST00000488727 DDX39AO00148 427 aaKnown RBP21.78■■□□□ 1.08
CCM2-216ENST00000488727 ORC2Q13416 577 aaPredicted RBP21.78■■□□□ 1.08
CCM2-216ENST00000488727 LAMC2Q13753 1193 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 LRRC41Q15345 812 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 LINC00301Q8NCQ3 95 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 GIMAP8Q8ND71 665 aaPredicted RBP21.78■■□□□ 1.08
CCM2-216ENST00000488727 ENGASEQ8NFI3 743 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 KCNG4Q8TDN1 519 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 AFG1LQ8WV93 481 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 SPATA33Q96N06 139 aa21.78■■□□□ 1.08
CCM2-216ENST00000488727 TBX3O15119 743 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 PSMD10O75832 226 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 MYCNP04198 464 aaPredicted RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 SP4Q02446 784 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 FAM160A1Q05DH4 1040 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 FSCN1Q16658 493 aaKnown RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 CKAP2LQ8IYA6 745 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 C4orf32Q8N8J7 132 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 KLHDC9Q8NEP7 349 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 MTMR9Q96QG7 549 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 SDF4Q9BRK5 362 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 GOLPH3LQ9H4A5 285 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 JPH1Q9HDC5 661 aaPredicted RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 A6NJR5 290 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 TFRCP02786 760 aaKnown RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 CST5P28325 142 aaPredicted RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 SNW1Q13573 536 aaKnown RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 CALCRLQ16602 461 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 LRCH2Q5VUJ6 765 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 ADALQ6DHV7 355 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 CCSAPQ6IQ19 270 aaPredicted RBP21.77■■□□□ 1.08
CCM2-216ENST00000488727 SASS6Q6UVJ0 657 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 PPTC7Q8NI37 304 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 FAM20AQ96MK3 541 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 RIT2Q99578 217 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 SPC25Q9HBM1 224 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 TBC1D22BQ9NU19 505 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 SLC9A2Q9UBY0 812 aa21.77■■□□□ 1.08
CCM2-216ENST00000488727 CCNE2O96020 404 aa21.76■■□□□ 1.07
CCM2-216ENST00000488727 MMP3P08254 477 aa21.76■■□□□ 1.07
CCM2-216ENST00000488727 MNX1P50219 401 aaPredicted RBP21.76■■□□□ 1.07
CCM2-216ENST00000488727 GNASQ5JWF2 1037 aa21.76■■□□□ 1.07
CCM2-216ENST00000488727 MRPS27Q92552 414 aaKnown RBP21.76■■□□□ 1.07
CCM2-216ENST00000488727 GPR20Q99678 358 aa21.76■■□□□ 1.07
CCM2-216ENST00000488727 PCDHA7Q9UN72 937 aa21.76■■□□□ 1.07
CCM2-216ENST00000488727 GAS7O60861 476 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 PTMAP06454 111 aaKnown RBP21.75■■□□□ 1.07
CCM2-216ENST00000488727 ME1P48163 572 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 PTGDRQ13258 359 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 RNF180Q86T96 592 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 WDR81Q562E7 1941 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 CPT1AP50416 773 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 STK38Q15208 465 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 ANO6Q4KMQ2 910 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 B3GNT9Q6UX72 402 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 FSIP1Q8NA03 581 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 ARRDC4Q8NCT1 418 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 TEKT3Q9BXF9 490 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 VAV3Q9UKW4 847 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 CLIC4Q9Y696 253 aa21.75■■□□□ 1.07
CCM2-216ENST00000488727 CCDC85CA6NKD9 419 aa21.74■■□□□ 1.07
CCM2-216ENST00000488727 OR52Z1P0C646 297 aa21.74■■□□□ 1.07
CCM2-216ENST00000488727 HOXD8P13378 290 aaPredicted RBP21.74■■□□□ 1.07
CCM2-216ENST00000488727 EN2P19622 333 aaPredicted RBP21.74■■□□□ 1.07
CCM2-216ENST00000488727 ACTR2P61160 394 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms