RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 MATN3O15232 486 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 NCLP19338 710 aaKnown RBP6.63□□□□□ -1.35
SMC4-218ENST00000486711 HSD3B2P26439 372 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 PKN3Q6P5Z2 889 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 TMC5Q6UXY8 1006 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 USP53Q70EK8 1073 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 SPATC1Q76KD6 591 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 THAP3Q8WTV1 239 aaPredicted RBP6.63□□□□□ -1.35
SMC4-218ENST00000486711 CDIP1Q9H305 208 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 PPP4R1LQ9P1A2 415 aa6.63□□□□□ -1.35
SMC4-218ENST00000486711 ENPP3O14638 875 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 HSP90AA2PQ14568 343 aaPredicted RBP6.62□□□□□ -1.35
SMC4-218ENST00000486711 VASNQ6EMK4 673 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 TRMT10BQ6PF06 316 aaKnown RBP6.62□□□□□ -1.35
SMC4-218ENST00000486711 ARHGEF18Q6ZSZ5 1173 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 HOMER1Q86YM7 354 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 LILRB2Q8N423 598 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 KLHL36Q8N4N3 616 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 PIP4K2CQ8TBX8 421 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 APPBP2Q92624 585 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 SGSM3Q96HU1 749 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 PHF20Q9BVI0 1012 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 BARX1Q9HBU1 254 aaPredicted RBP6.62□□□□□ -1.35
SMC4-218ENST00000486711 ST6GALNAC2Q9UJ37 374 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 NUB1Q9Y5A7 615 aa6.62□□□□□ -1.35
SMC4-218ENST00000486711 NPEPPSL1A6NEC2 478 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 SLC27A2O14975 620 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 DLX3O60479 287 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 MSCO60682 206 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 CDC45O75419 566 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 EPHB4P54760 987 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 PPP2CBP62714 309 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 PPP2CAP67775 309 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 ZXDAP98168 799 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 C2orf27AQ580R0 203 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 TAF7LQ5H9L4 462 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 KBTBD2Q8IY47 623 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 KISS1RQ969F8 398 aaPredicted RBP6.61□□□□□ -1.35
SMC4-218ENST00000486711 AARSD1Q9BTE6 412 aaKnown RBP6.61□□□□□ -1.35
SMC4-218ENST00000486711 SPATA9Q9BWV2 254 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 JAM3Q9BX67 310 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 DLL4Q9NR61 685 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 WASF3Q9UPY6 502 aa6.61□□□□□ -1.35
SMC4-218ENST00000486711 ANKRD62A6NC57 917 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 DIAPH1O60610 1272 aaKnown RBP6.6□□□□□ -1.35
SMC4-218ENST00000486711 NFATC3Q12968 1075 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 EGFLAMQ63HQ2 1017 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 OTOP3Q7RTS5 596 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 CIR1Q86X95 450 aaPredicted RBP6.6□□□□□ -1.35
SMC4-218ENST00000486711 ZSWIM2Q8NEG5 633 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 IGDCC4Q8TDY8 1250 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 DCAF4Q8WV16 495 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 SLKQ9H2G2 1235 aaPredicted RBP6.6□□□□□ -1.35
SMC4-218ENST00000486711 JADE2Q9NQC1 790 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 FANCLQ9NW38 375 aa6.6□□□□□ -1.35
SMC4-218ENST00000486711 PPARGC1AQ9UBK2 798 aaKnown RBP6.6□□□□□ -1.35
SMC4-218ENST00000486711 GRK2P25098 689 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 GRK3P35626 688 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 GRIN1Q05586 938 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 KIZQ2M2Z5 673 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 ZC3H12BQ5HYM0 836 aaKnown RBP6.59□□□□□ -1.35
SMC4-218ENST00000486711 PROSER1Q86XN7 944 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 DTX3Q8N9I9 347 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 UHMK1Q8TAS1 419 aaKnown RBP6.59□□□□□ -1.35
SMC4-218ENST00000486711 IPO9Q96P70 1041 aaKnown RBP6.59□□□□□ -1.35
SMC4-218ENST00000486711 CDK5RAP1Q96SZ6 601 aaKnown RBP6.59□□□□□ -1.35
SMC4-218ENST00000486711 ZFYVE21Q9BQ24 234 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 TMEM260Q9NX78 707 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 RBPJLQ9UBG7 517 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 TSC22D4Q9Y3Q8 395 aa6.59□□□□□ -1.35
SMC4-218ENST00000486711 ESYT3A0FGR9 886 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 CHGBP05060 677 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 FGFR1P11362 822 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 GNAT1P11488 350 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 COL6A1P12109 1028 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 SPIRE1Q08AE8 756 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 TUSC3Q13454 348 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 ICAM4Q14773 271 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 LONRF2Q1L5Z9 754 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 SLFN13Q68D06 897 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 LBX2Q6XYB7 198 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 CLEC4DQ8WXI8 215 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 ADAM29Q9UKF5 820 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.58□□□□□ -1.36
SMC4-218ENST00000486711 ZDHHC9Q9Y397 364 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 PTCH2Q9Y6C5 1203 aa6.58□□□□□ -1.36
SMC4-218ENST00000486711 GPR42O15529 346 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 PRODHO43272 600 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 B4GALT4O60513 344 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 FAHP16930 419 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 SMAD2Q15796 467 aaKnown RBP6.57□□□□□ -1.36
SMC4-218ENST00000486711 PAN2Q504Q3 1202 aaKnown RBP6.57□□□□□ -1.36
SMC4-218ENST00000486711 PLEKHG4Q58EX7 1191 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 JMYQ8N9B5 988 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 ZBTB38Q8NAP3 1195 aaPredicted RBP6.57□□□□□ -1.36
SMC4-218ENST00000486711 CDC6Q99741 560 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 PDGFDQ9GZP0 370 aaPredicted RBP6.57□□□□□ -1.36
SMC4-218ENST00000486711 KLC2Q9H0B6 622 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 KANSL2Q9H9L4 492 aa6.57□□□□□ -1.36
SMC4-218ENST00000486711 ARHGEF4Q9NR80 690 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms