RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 TLR3O15455 904 aaKnown RBP13.4□□□□□ -0.26
HPS4-214ENST00000485842 DHX15O43143 795 aaKnown RBP13.4□□□□□ -0.26
HPS4-214ENST00000485842 CHMP2AO43633 222 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 MARCH6O60337 910 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 CCNE2O96020 404 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 SYN1P17600 705 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 PDCP20941 246 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 KIAA0753Q2KHM9 967 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 C1orf53Q5VUE5 145 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 PPP4R3AQ6IN85 833 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 GLG1Q92896 1179 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 SLC5A5Q92911 643 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 C16orf70Q9BSU1 422 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 PCDH10Q9P2E7 1040 aa13.4□□□□□ -0.26
HPS4-214ENST00000485842 ZNF215Q9UL58 517 aaPredicted RBP13.4□□□□□ -0.26
HPS4-214ENST00000485842 NOL7Q9UMY1 257 aaKnown RBP13.4□□□□□ -0.26
HPS4-214ENST00000485842 TNRC18O15417 2968 aaPredicted RBP13.39□□□□□ -0.27
HPS4-214ENST00000485842 H3BRB1 525 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 BACH1O14867 736 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 CLTBP09497 229 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 U2AF2P26368 475 aaKnown RBP eCLIP13.39□□□□□ -0.271e-6■■□□□ 13.6
HPS4-214ENST00000485842 MARK3P27448 753 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 MCM7P33993 719 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 CDK7P50613 346 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 KRT76Q01546 638 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 ZNF746Q6NUN9 644 aaPredicted RBP13.39□□□□□ -0.27
HPS4-214ENST00000485842 FAM126BQ8IXS8 530 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 SLC43A3Q8NBI5 491 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 ETNPPLQ8TBG4 499 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 RIT2Q99578 217 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 TRPV6Q9H1D0 765 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 TUT1Q9H6E5 874 aaKnown RBP13.39□□□□□ -0.27
HPS4-214ENST00000485842 AZI2Q9H6S1 392 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 PDLIM7Q9NR12 457 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 TRMT13Q9NUP7 481 aaKnown RBP13.39□□□□□ -0.27
HPS4-214ENST00000485842 SAMM50Q9Y512 469 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 EMSYQ7Z589 1322 aa13.39□□□□□ -0.27
HPS4-214ENST00000485842 MKI67P46013 3256 aaKnown RBP13.38□□□□□ -0.27
HPS4-214ENST00000485842 H0YGN5 161 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 HAS3O00219 553 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 B4GALT4O60513 344 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 NEMFO60524 1076 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 SUPT20HL2P0C7V6 817 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 NBR1Q14596 966 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 ZNF174Q15697 407 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 CALCRLQ16602 461 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 TTC38Q5R3I4 469 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 MIS18BP1Q6P0N0 1132 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 NFRKBQ6P4R8 1299 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 ANKRD33Q7Z3H0 272 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 C7orf31Q8N865 590 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 TOX2Q96NM4 488 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 PCYT2Q99447 389 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 SEZ6LQ9BYH1 1024 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 UNC45AQ9H3U1 944 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 KCNMB3Q9NPA1 279 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 HDAC6Q9UBN7 1215 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 PRKAG2Q9UGJ0 569 aa13.38□□□□□ -0.27
HPS4-214ENST00000485842 WDR64B1ANS9 1081 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 LGR5O75473 907 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 PSMD10O75832 226 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 BAG4O95429 457 aaKnown RBP13.37□□□□□ -0.27
HPS4-214ENST00000485842 SYT1P21579 422 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 FAAP100Q0VG06 881 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 FAM160B1Q5W0V3 765 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 ABHD15Q6UXT9 468 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 MIER3Q7Z3K6 550 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 SH3RF1Q7Z6J0 888 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 FERMT3Q86UX7 667 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 CCDC60Q8IWA6 550 aaPredicted RBP13.37□□□□□ -0.27
HPS4-214ENST00000485842 SMAP1Q8IYB5 467 aaPredicted RBP13.37□□□□□ -0.27
HPS4-214ENST00000485842 HAS1Q92839 578 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 SMARCAD1Q9H4L7 1026 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 DISC1Q9NRI5 854 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 TMEM39AQ9NV64 488 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 ERAP1Q9NZ08 941 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 GTF2IRD1Q9UHL9 959 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 NOD1Q9Y239 953 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 WDR81Q562E7 1941 aa13.37□□□□□ -0.27
HPS4-214ENST00000485842 TBX3O15119 743 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 ATG7O95352 703 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 CD4P01730 458 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 PSAPP07602 524 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 SMIM10L2AP0DMW4 78 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 SMIM10L2BP0DMW5 78 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 TRAPPC10P48553 1259 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 STAT5BP51692 787 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 JAK3P52333 1124 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 PTPN11Q06124 597 aaPredicted RBP13.36□□□□□ -0.27
HPS4-214ENST00000485842 PTGISQ16647 500 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 GDF6Q6KF10 455 aaPredicted RBP13.36□□□□□ -0.27
HPS4-214ENST00000485842 SWSAP1Q6NVH7 229 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 SLFN12Q8IYM2 578 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 FAM20AQ96MK3 541 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 PPP1R12CQ9BZL4 782 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 TMEM60Q9H2L4 133 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 RNPEPQ9H4A4 650 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 ZNF302Q9NR11 478 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 TRPC6Q9Y210 931 aa13.36□□□□□ -0.27
HPS4-214ENST00000485842 PCDHA10Q9Y5I2 948 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms