RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TSG101Q99816 390 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 TMOD3Q9NYL9 352 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 CEP72Q9P209 647 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 STARD3NLO95772 234 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 MYBP10242 640 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 GHRP10912 638 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 ARMC2Q8NEN0 867 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 SPAG5Q96R06 1193 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 TRIM51Q9BSJ1 452 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 STK38LQ9Y2H1 464 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 SLC8A3P57103 927 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 IRX1P78414 480 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 LRRC34Q8IZ02 419 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 PRCCQ92733 491 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 RIOK1Q9BRS2 568 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 C15orf41Q9Y2V0 281 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 WTIPA6NIX2 430 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 F8VZ95 297 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 ERMARDQ5T6L9 678 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 DAAM2Q86T65 1068 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 NELFCDQ8IXH7 590 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 METTL13Q8N6R0 699 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 TMEM59LQ9UK28 342 aa20.52■□□□□ 0.88
CCDC88B-207ENST00000479965 RBAK-RBAKDNI3L0D1 243 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 GOLGA8HP0CJ92 632 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 ASIC2Q16515 512 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 BZW1Q7L1Q6 419 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 TAX1BP1Q86VP1 789 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 SCFD2Q8WU76 684 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 FAM129AQ9BZQ8 928 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 MAGEF1Q9HAY2 307 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 TRPC6Q9Y210 931 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 UTP11Q9Y3A2 253 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 CAMTA1Q9Y6Y1 1673 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 TIAM2Q8IVF5 1701 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 EME2A4GXA9 379 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 NOL4O94818 638 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 SHBGP04278 402 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 PAEPP09466 180 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 KCNJ2P63252 427 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 TMED8Q6PL24 325 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 PEX26Q7Z412 305 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 PRMT1Q99873 361 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 MTFR1LQ9H019 292 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 ABCF3Q9NUQ8 709 aa20.51■□□□□ 0.87
CCDC88B-207ENST00000479965 A0A0G2JS52 829 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 COPB2P35606 906 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 RCSD1Q6JBY9 416 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 LRRC55Q6ZSA7 311 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 KIF2BQ8N4N8 673 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 PNMA1Q8ND90 353 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 CNOT10Q9H9A5 744 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 TRHP20396 242 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 SLCO1A2P46721 670 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 USP11P51784 963 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 TRPM8Q7Z2W7 1104 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 CCDC26Q8TAB7 109 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 FMO2Q99518 471 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 FAM167BQ9BTA0 163 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 GLI3P10071 1580 aa20.5■□□□□ 0.87
CCDC88B-207ENST00000479965 CAPRIN2Q6IMN6 1127 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 PBKQ96KB5 322 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 AK8Q96MA6 479 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 EBF2Q9HAK2 575 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 SPATS2LQ9NUQ6 558 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 INTS9Q9NV88 658 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 AGAP1Q9UPQ3 857 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 COL4A3BPQ9Y5P4 624 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 UPP2O95045 317 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 SEMA3FQ13275 785 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 UNC13DQ70J99 1090 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 GUF1Q8N442 669 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 ZNF483Q8TF39 744 aaPredicted RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 NOP53Q9NZM5 478 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 IGHMBP2P38935 993 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 NAPAP54920 295 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 PTK2Q05397 1052 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 LRRC63Q05C16 580 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 MAEAQ7L5Y9 396 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 MAB21L3Q8N8X9 362 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 MMTAG2Q9BU76 263 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 YIPF3Q9GZM5 350 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 NUCKS1Q9H1E3 243 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 VAT1LQ9HCJ6 419 aa20.49■□□□□ 0.87
CCDC88B-207ENST00000479965 LARP4BQ92615 738 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 NLRP3Q96P20 1036 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 FER1L4A9Z1Z3 1794 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 A8MUI8 341 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 LAD1O00515 517 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 ACTN1P12814 892 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 TFAP4Q01664 338 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 SPICE1Q8N0Z3 855 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 MGARPQ8TDB4 240 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 UIMC1Q96RL1 719 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 AZI2Q9H6S1 392 aa20.48■□□□□ 0.87
CCDC88B-207ENST00000479965 UBOX5O94941 541 aa20.47■□□□□ 0.87
CCDC88B-207ENST00000479965 IFI35P80217 286 aaPredicted RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms