RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	NSD3	Q9BZ95	1437 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	CD163L1	Q9NR16	1453 aa		5.38	□□□□□ -1.55
PTCD3-212	ENST00000477520	PHLPP1	O60346	1717 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	MPHOSPH10	O00566	681 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	MAP2K7	O14733	419 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	POLR3G	O15318	223 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	MYO1B	O43795	1136 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	TRIM27	P14373	513 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	PDC	P20941	246 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	NF2	P35240	595 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	CAP2	P40123	477 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	PRPH	P41219	470 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	LMAN1	P49257	510 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	SLC8A3	P57103	927 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	ETF1	P62495	437 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	LMNB2	Q03252	620 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	ADCY2	Q08462	1091 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	PLCB4	Q15147	1175 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	RBBP5	Q15291	538 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	AP1AR	Q63HQ0	302 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	CC2D1A	Q6P1N0	951 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	B4GALNT4	Q76KP1	1039 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	TMPRSS7	Q7RTY8	843 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	CDH24	Q86UP0	819 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	MORC1	Q86VD1	984 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	CREG2	Q8IUH2	290 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	APLF	Q8IW19	511 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	REXO1L1P	Q8IX06	675 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	C17orf53	Q8N3J3	647 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	MFSD2A	Q8NA29	543 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	KCNH5	Q8NCM2	988 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	XAGE3	Q8WTP9	111 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	DDX17	Q92841	729 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	GTF3C6	Q969F1	213 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	PLPPR2	Q96GM1	343 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	SGSM3	Q96HU1	749 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZSCAN31	Q96LW9	406 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	WNT10A	Q9GZT5	417 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	SCAND2P	Q9GZW5	306 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	NAT10	Q9H0A0	1025 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	NUP62CL	Q9H1M0	184 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	VIPAS39	Q9H9C1	493 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	TOMM22	Q9NS69	142 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	SPATS2L	Q9NUQ6	558 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	RTEL1	Q9NZ71	1219 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	CNOT6	Q9ULM6	557 aa	Known RBP	5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	RGS12	O14924	1447 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	PXDN	Q92626	1479 aa		5.37	□□□□□ -1.55
PTCD3-212	ENST00000477520	FYB1	O15117	783 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZSCAN12	O43309	604 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	SEMA7A	O75326	666 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	SASH1	O94885	1247 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	ELF1	P32519	619 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	ARHGAP25	P42331	645 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	CDK8	P49336	464 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	DRP2	Q13474	957 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	SSPN	Q14714	243 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	ERCC6L	Q2NKX8	1250 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	MAP9	Q49MG5	647 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	TCERG1L	Q5VWI1	586 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	PRAMEF13	Q5VWM6	474 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	MICALCL	Q6ZW33	695 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	IRF2BP1	Q8IU81	584 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	RPAP2	Q8IXW5	612 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	TCP11L2	Q8N4U5	519 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZGPAT	Q8N5A5	531 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	CEP112	Q8N8E3	955 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	SPC24	Q8NBT2	197 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	CACTIN	Q8WUQ7	758 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	CABS1	Q96KC9	395 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	DMRTB1	Q96MA1	342 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	TRIM6	Q9C030	488 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	XYLT2	Q9H1B5	865 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	SUDS3	Q9H7L9	328 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	GGA2	Q9UJY4	613 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	MYO6	Q9UM54	1294 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	KCTD3	Q9Y597	815 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	USP31	Q70CQ4	1352 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	JCAD	Q9P266	1359 aa		5.36	□□□□□ -1.55
PTCD3-212	ENST00000477520	KIF20B	Q96Q89	1820 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	TRPM3	Q9HCF6	1732 aa	Predicted RBP	5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	KDR	P35968	1356 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	SPATA31A6	Q5VVP1	1343 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	EBAG9	O00559	213 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	PEX10	O60683	326 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	TADA3	O75528	432 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	TBC1D8	O95759	1140 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZGLP1	P0C6A0	271 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	HSPA1L	P34931	641 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	KIR3DL1	P43629	444 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZNF165	P49910	485 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	NEK4	P51957	841 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	GYS2	P54840	703 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	KRT85	P78386	507 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ST5	P78524	1137 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	APOBR	Q0VD83	1088 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	PKP1	Q13835	747 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	GAB4	Q2WGN9	574 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	PREPL	Q4J6C6	727 aa	Predicted RBP	5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms