RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 METAP2P50579 478 aaKnown RBP eCLIP16.15■□□□□ 0.18
UPF3A-204ENST00000475218 ADCY7P51828 1080 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 EVCP57679 992 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 PFKFB3Q16875 520 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-204ENST00000475218 CNKSR3Q6P9H4 555 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 PHOSPHO2Q8TCD6 241 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 LMBR1Q8WVP7 490 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 CRYGNQ8WXF5 182 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 PCYT2Q99447 389 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 MXRA8Q9BRK3 442 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 ANO3Q9BYT9 981 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 EPOPA6NHQ4 379 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 DLL1O00548 723 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 REC8O95072 547 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 ARP10275 920 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 THPOP40225 353 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 TOB2Q14106 344 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-204ENST00000475218 PPP2R2DQ66LE6 453 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 KCNH7Q9NS40 1196 aa16.15■□□□□ 0.18
UPF3A-204ENST00000475218 NAP1L2Q9ULW6 460 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-204ENST00000475218 MICAL3Q7RTP6 2002 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 hCG_1984214I3L0E3 225 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 PPFIA3O75145 1194 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 PARNO95453 639 aaKnown RBP16.14■□□□□ 0.17
UPF3A-204ENST00000475218 SCG2P13521 617 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 SREBF1P36956 1147 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 ITGB3BPQ13352 177 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-204ENST00000475218 TEX2Q8IWB9 1127 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 ZNF713Q8N859 430 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-204ENST00000475218 GIMAP8Q8ND71 665 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-204ENST00000475218 PHKBQ93100 1093 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 CDHR1Q96JP9 859 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 PRDM6Q9NQX0 595 aa16.14■□□□□ 0.17
UPF3A-204ENST00000475218 LCHNA4D1U4 455 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 PDIA3P30101 505 aaKnown RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 TAP1Q03518 808 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 SEPT1Q8WYJ6 367 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 NCOA5Q9HCD5 579 aaKnown RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 ZSWIM6Q9HCJ5 1215 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 RSPH10B2B2RC85 870 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 RFXAPO00287 272 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 MEIS1O00470 390 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 PRPF3O43395 683 aaKnown RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 EDIL3O43854 480 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 LGR5O75473 907 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 FOSP01100 380 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 RSPH10BP0C881 870 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 FGD1P98174 961 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 CEP55Q53EZ4 464 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 MARCH8Q5T0T0 291 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 RUFY4Q6ZNE9 571 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 ZBTB10Q96DT7 871 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 COL25A1Q9BXS0 654 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 ZMYND12Q9H0C1 365 aa16.13■□□□□ 0.17
UPF3A-204ENST00000475218 AGO4Q9HCK5 861 aaKnown RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 ZNF215Q9UL58 517 aaPredicted RBP16.13■□□□□ 0.17
UPF3A-204ENST00000475218 IGLV3-22A0A075B6J6 115 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 ABHD14A-ACY1A0A1B0GW23 586 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 ESYT2A0FGR8 921 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 FAM86B1E9PN63 330 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 MAFGO15525 162 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 EPB41L2O43491 1005 aaKnown RBP16.12■□□□□ 0.17
UPF3A-204ENST00000475218 FAM86B2P0C5J1 330 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 MARK3P27448 753 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 ARHGAP4P98171 946 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 AP3B2Q13367 1082 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 PLEKHG4Q58EX7 1191 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 JAKMIP3Q5VZ66 844 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 RUFY3Q7L099 469 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 DBF4BQ8NFT6 615 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 CERS4Q9HA82 394 aa16.12■□□□□ 0.17
UPF3A-204ENST00000475218 KAT6AQ92794 2004 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 EMSYQ7Z589 1322 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 CCDC196A0A1B0GTZ2 297 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 CCNE2O96020 404 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 CTSHP09668 335 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 GAS2L1Q99501 681 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-204ENST00000475218 LARP6Q9BRS8 491 aaKnown RBP16.11■□□□□ 0.17
UPF3A-204ENST00000475218 JPH1Q9HDC5 661 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-204ENST00000475218 COL4A4P53420 1690 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-204ENST00000475218 NFASCO94856 1347 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 NRCAMQ92823 1304 aa16.11■□□□□ 0.17
UPF3A-204ENST00000475218 MBLAC1A4D2B0 266 aaPredicted RBP16.1■□□□□ 0.17
UPF3A-204ENST00000475218 ACTR2P61160 394 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 FAM26DQ5JW98 314 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 UPF3BQ9BZI7 483 aaKnown RBP16.1■□□□□ 0.17
UPF3A-204ENST00000475218 EHMT1Q9H9B1 1298 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 ERAP1Q9NZ08 941 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 SLC9A2Q9UBY0 812 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 MUC3AQ02505 3323 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 DHX15O43143 795 aaKnown RBP16.1■□□□□ 0.17
UPF3A-204ENST00000475218 CAND2O75155 1236 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 GJB5O95377 273 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 CHRNA1P02708 482 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 IFNAR1P17181 557 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 PSMA5P28066 241 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 KCNJ6P48051 423 aa16.1■□□□□ 0.17
UPF3A-204ENST00000475218 CCT2P78371 535 aaKnown RBP16.1■□□□□ 0.17
UPF3A-204ENST00000475218 MGAT3Q09327 533 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms