RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 PABPC4Q13310 644 aaKnown RBP eCLIP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 EPHA7Q15375 998 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 HERC4Q5GLZ8 1057 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 SAMD1Q6SPF0 538 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 ARHGAP27Q6ZUM4 889 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 TOGARAM2Q6ZUX3 1019 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 EPM2AIP1Q7L775 607 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 TMTC1Q8IUR5 882 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 CREBRFQ8IUR6 639 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 REPS2Q8NFH8 660 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 SYTL5Q8TDW5 730 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-222ENST00000474655 SCFD1Q8WVM8 642 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 IQCDQ96DY2 449 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 DNAJC7Q99615 494 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 REEP2Q9BRK0 252 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 NUP58Q9BVL2 599 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 MAF1Q9H063 256 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 SPON1Q9HCB6 807 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 RGL1Q9NZL6 768 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 MYH11P35749 1972 aa13.57□□□□□ -0.24
SYNE1-222ENST00000474655 WDR81Q562E7 1941 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 TTC26A0AVF1 554 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 B4DLN1 442 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 ATP2A1O14983 1001 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 MTIF2P46199 727 aaKnown RBP13.56□□□□□ -0.24
SYNE1-222ENST00000474655 CYP4A11Q02928 519 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 TBC1D8BQ0IIM8 1120 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 LRRC41Q15345 812 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 SUPT20HL1Q3ZLR7 823 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 RAD9BQ6WBX8 426 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 PPP4R3CPQ6ZMV5 832 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 CPXCR1Q8N123 301 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 NEK9Q8TD19 979 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 CEP63Q96MT8 703 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 NOC4LQ9BVI4 516 aaKnown RBP13.56□□□□□ -0.24
SYNE1-222ENST00000474655 FGFBP2Q9BYJ0 223 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 BHMT2Q9H2M3 363 aa13.56□□□□□ -0.24
SYNE1-222ENST00000474655 SOWAHDA6NJG2 315 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 RASSF10A6NK89 507 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 NKRFO15226 690 aaKnown RBP eCLIP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 DHX15O43143 795 aaKnown RBP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 KRT9P35527 623 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 RPS6P62753 249 aaKnown RBP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 MRPS9P82933 396 aaKnown RBP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 MAN2A1Q16706 1144 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 BMT2Q1RMZ1 405 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 EDRF1Q3B7T1 1238 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 VWA3BQ502W6 1294 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 PRAMEF18Q5VWM3 479 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 RINT1Q6NUQ1 792 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 PHLPP2Q6ZVD8 1323 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 OR8K1Q8NGG5 319 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 EEF2KMTQ96G04 330 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 DYDC2Q96IM9 177 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 TEKT3Q9BXF9 490 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 UNC45AQ9H3U1 944 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 OTOFQ9HC10 1997 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 OLFML3Q9NRN5 406 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 KCNH7Q9NS40 1196 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 KCND2Q9NZV8 630 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 ADGRG1Q9Y653 693 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 ZHX2Q9Y6X8 837 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 KIAA1217Q5T5P2 1943 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 MYPNQ86TC9 1320 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 A0A1W2PQJ5 194 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 KRT18P05783 430 aaKnown RBP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 CCDC175P0C221 793 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 DSG3P32926 999 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 MTF1Q14872 753 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 TKFCQ3LXA3 575 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 SH3D19Q5HYK7 790 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 CYP26C1Q6V0L0 522 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 C1orf186Q6ZWK4 172 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 IL31RAQ8NI17 732 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 ATG4CQ96DT6 458 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 TRERF1Q96PN7 1200 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 NACC1Q96RE7 527 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 RUSC1Q9BVN2 902 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 NDST4Q9H3R1 872 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 JADE2Q9NQC1 790 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 TRAF3IP3Q9Y228 551 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 LUC7L2Q9Y383 392 aaKnown RBP13.55□□□□□ -0.24
SYNE1-222ENST00000474655 AFG3L2Q9Y4W6 797 aa13.55□□□□□ -0.24
SYNE1-222ENST00000474655 USP2O75604 605 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-222ENST00000474655 GNA14O95837 355 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 GAP43P17677 238 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 ERVK-24P63145 666 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 CACNB1Q02641 598 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-222ENST00000474655 CTTNQ14247 550 aaKnown RBP13.54□□□□□ -0.24
SYNE1-222ENST00000474655 COG2Q14746 738 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 SYCP1Q15431 976 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 MEA1Q16626 185 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 XRRA1Q6P2D8 792 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 CATSPERGQ6ZRH7 1159 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 TPH2Q8IWU9 490 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 WNK4Q96J92 1243 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 TAAR1Q96RJ0 339 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 L2HGDHQ9H9P8 463 aa13.54□□□□□ -0.24
SYNE1-222ENST00000474655 AGO4Q9HCK5 861 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms