RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ZNF236Q9UL36 1845 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 ABHD14A-ACY1A0A1B0GW23 586 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 SHISA8B8ZZ34 492 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 C5orf67F2Z3F1 127 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 CABYRO75952 493 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 ANXA1P04083 346 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 RB1P06400 928 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 SUPT20HL2P0C7V6 817 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 GJA9P57773 515 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 RBM10P98175 930 aaKnown RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 AIMP1Q12904 312 aaKnown RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 TDGQ13569 410 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 CAMK1Q14012 370 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 PHLDB3Q6NSJ2 640 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 PCSK4Q6UW60 755 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 RBM23Q86U06 439 aaKnown RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 EPS8L1Q8TE68 723 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 TINF2Q9BSI4 451 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 C11orf84Q9BUA3 381 aaPredicted RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 UPF3AQ9H1J1 476 aaKnown RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 ALDH8A1Q9H2A2 487 aaPredicted RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 ALG2Q9H553 416 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 BCAS3Q9H6U6 928 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 TRMT13Q9NUP7 481 aaKnown RBP6.41□□□□□ -1.38
HMGB1-207ENST00000468384 BTBD7Q9P203 1132 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 WNT16Q9UBV4 365 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 MGAQ8IWI9 3026 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 BOD1L1Q8NFC6 3051 aa6.41□□□□□ -1.38
HMGB1-207ENST00000468384 LAMA1P25391 3075 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CACNA1DQ01668 2161 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 PALM3A6NDB9 673 aaPredicted RBP6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CFAP99D6REC4 459 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CTAGE5O15320 804 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 PDE8AO60658 829 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 MMP1P03956 469 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CEACAM1P13688 526 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CR2P20023 1033 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CTNNB1P35222 781 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 BACE1P56817 501 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 KCNA1Q09470 495 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 TCTN1Q2MV58 587 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CNKSR3Q6P9H4 555 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 VN1R2Q8NFZ6 395 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 ATP8B4Q8TF62 1192 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 XAGE3Q8WTP9 111 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.4□□□□□ -1.38
HMGB1-207ENST00000468384 TSC1Q92574 1164 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 UCN2Q96RP3 112 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 MRIQ9BWK5 157 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CARD11Q9BXL7 1154 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 SIL1Q9H173 461 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 JADE2Q9NQC1 790 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 MIS18AQ9NYP9 233 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 CNPY2Q9Y2B0 182 aa6.4□□□□□ -1.38
HMGB1-207ENST00000468384 RALGAPA1Q6GYQ0 2036 aa6.4□□□□□ -1.39
HMGB1-207ENST00000468384 HIVEP3Q5T1R4 2406 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 KIAA1217Q5T5P2 1943 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 A0A087WV48 116 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L5A8MUK1 530 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 PATL2C9JE40 543 aaKnown RBP6.39□□□□□ -1.39
HMGB1-207ENST00000468384 OIP5O43482 229 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 LUC7L3O95232 432 aaKnown RBP6.39□□□□□ -1.39
HMGB1-207ENST00000468384 PLCD1P51178 756 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 BEX3Q00994 111 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 UBE4AQ14139 1066 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 UBAP2LQ14157 1087 aaKnown RBP6.39□□□□□ -1.39
HMGB1-207ENST00000468384 GPNMBQ14956 572 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 HIST2H2BCQ6DN03 193 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 TSSK4Q6SA08 328 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 ZNF574Q6ZN55 896 aaPredicted RBP6.39□□□□□ -1.39
HMGB1-207ENST00000468384 TDRD5Q8NAT2 981 aaKnown RBP6.39□□□□□ -1.39
HMGB1-207ENST00000468384 PJA1Q8NG27 643 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 MDM1Q8TC05 714 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 MYL10Q9BUA6 226 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 APOL5Q9BWW9 433 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 FAM126AQ9BYI3 521 aaPredicted RBP6.39□□□□□ -1.39
HMGB1-207ENST00000468384 POMKQ9H5K3 350 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 GPR108Q9NPR9 543 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 CA14Q9ULX7 337 aa6.39□□□□□ -1.39
HMGB1-207ENST00000468384 LRRN2O75325 713 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 GATA4P43694 442 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 PSMC6P62333 389 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 EIF4G2P78344 907 aaKnown RBP eCLIP6.38□□□□□ -1.39
HMGB1-207ENST00000468384 EML3Q32P44 896 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 RNF43Q68DV7 783 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 SYCE2Q6PIF2 218 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 MCM10Q7L590 875 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 ABRAQ8N0Z2 381 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 PRR7Q8TB68 274 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 L3MBTL2Q969R5 705 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 YME1L1Q96TA2 773 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 WDR18Q9BV38 432 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 PRORYQ9H606 182 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 AS3MTQ9HBK9 375 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 USP40Q9NVE5 1235 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 CDH22Q9UJ99 828 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 SALL3Q9BXA9 1300 aa6.38□□□□□ -1.39
HMGB1-207ENST00000468384 COL5A1P20908 1838 aaPredicted RBP6.38□□□□□ -1.39
HMGB1-207ENST00000468384 CACNA1EQ15878 2313 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 BLACEA4D250 179 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms