RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 PPP2R3CQ969Q6 453 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 RILPL2Q969X0 211 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 TTC14Q96N46 770 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 KATNAL1Q9BW62 490 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 LNPKQ9C0E8 428 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 MYH6P13533 1939 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 TTC3P53804 2025 aa11.38□□□□□ -0.59
USP39-212ENST00000465514 SNHG28P0DPA3 235 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 PCP11498 1178 aaKnown RBP11.37□□□□□ -0.59
USP39-212ENST00000465514 ATF7P17544 494 aaPredicted RBP11.37□□□□□ -0.59
USP39-212ENST00000465514 SP100P23497 879 aaPredicted RBP11.37□□□□□ -0.59
USP39-212ENST00000465514 RPS6P62753 249 aaKnown RBP11.37□□□□□ -0.59
USP39-212ENST00000465514 ZNF543Q08ER8 600 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 RBM23Q86U06 439 aaKnown RBP11.37□□□□□ -0.59
USP39-212ENST00000465514 SERINC5Q86VE9 423 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 TBC1D10CQ8IV04 446 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 KIAA2013Q8IYS2 634 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 PNMA2Q9UL42 364 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 PLAGL2Q9UPG8 496 aa11.37□□□□□ -0.59
USP39-212ENST00000465514 PKD1L2Q7Z442 2459 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 HAS3O00219 553 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 CTSHP09668 335 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 PRR29P0C7W0 189 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 GOLGA8HP0CJ92 632 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 SDSP20132 328 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 MFAP1P55081 439 aaKnown RBP11.36□□□□□ -0.59
USP39-212ENST00000465514 RBM10P98175 930 aaKnown RBP11.36□□□□□ -0.59
USP39-212ENST00000465514 PUM1Q14671 1186 aaKnown RBP eCLIP11.36□□□□□ -0.59
USP39-212ENST00000465514 ASTLQ6HA08 431 aaPredicted RBP11.36□□□□□ -0.59
USP39-212ENST00000465514 B4GALNT3Q6L9W6 998 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 SEPT14Q6ZU15 432 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 KREMEN2Q8NCW0 462 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 DNERQ8NFT8 737 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 SUSD6Q92537 303 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 ESR2Q92731 530 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 ZKSCAN3Q9BRR0 538 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 RNF41Q9H4P4 317 aaPredicted RBP11.36□□□□□ -0.59
USP39-212ENST00000465514 RC3H2Q9HBD1 1191 aaKnown RBP11.36□□□□□ -0.59
USP39-212ENST00000465514 PCDHGC5Q9Y5F6 944 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 LAMA4Q16363 1823 aa11.36□□□□□ -0.59
USP39-212ENST00000465514 NEDD4P46934 1319 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 WDR19Q8NEZ3 1342 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 KAT6AQ92794 2004 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 ZNF213O14771 459 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 BRD1O95696 1058 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 MTMR3Q13615 1198 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 USH1GQ495M9 461 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 GPATCH4Q5T3I0 446 aaKnown RBP11.35□□□□□ -0.59
USP39-212ENST00000465514 PLVAPQ9BX97 442 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 UBA5Q9GZZ9 404 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 CPVLQ9H3G5 476 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 SMOC2Q9H3U7 446 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 FANCMQ8IYD8 2048 aa11.35□□□□□ -0.59
USP39-212ENST00000465514 ITGB1P05556 798 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 BTG3Q14201 252 aaPredicted RBP11.34□□□□□ -0.59
USP39-212ENST00000465514 CHD1LQ86WJ1 897 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 DGKHQ86XP1 1220 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 PLEKHM2Q8IWE5 1019 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 SMC5Q8IY18 1101 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 UBALD2Q8IYN6 164 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 RGS22Q8NE09 1264 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 PPTC7Q8NI37 304 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 KCNG4Q8TDN1 519 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 RWDD1Q9H446 243 aaPredicted RBP11.34□□□□□ -0.59
USP39-212ENST00000465514 LOXHD1Q8IVV2 1947 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 DOCK5Q9H7D0 1870 aa11.34□□□□□ -0.59
USP39-212ENST00000465514 FAM208BQ5VWN6 2430 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 B4DLN1 442 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 MRPL12P52815 198 aaKnown RBP11.33□□□□□ -0.6
USP39-212ENST00000465514 AAMPQ13685 434 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 CCDC178Q5BJE1 867 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 CWC27Q6UX04 472 aaKnown RBP11.33□□□□□ -0.6
USP39-212ENST00000465514 PNMA1Q8ND90 353 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 VN1R2Q8NFZ6 395 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 SPPL3Q8TCT6 385 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 TBC1D5Q92609 795 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 APBB2Q92870 758 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 ATP6V0A1Q93050 837 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 P2RX5Q93086 422 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 EMID1Q96A84 441 aaPredicted RBP11.33□□□□□ -0.6
USP39-212ENST00000465514 MFSD1Q9H3U5 465 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 OSBPL3Q9H4L5 887 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 TSHZ2Q9NRE2 1034 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 SORCS3Q9UPU3 1222 aa11.33□□□□□ -0.6
USP39-212ENST00000465514 MRPL42Q9Y6G3 142 aaKnown RBP11.33□□□□□ -0.6
USP39-212ENST00000465514 C17orf102A2RUQ5 167 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 PER2O15055 1255 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 IGHDP01880 384 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 NUCB1Q02818 461 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 CDC37Q16543 378 aaPredicted RBP11.32□□□□□ -0.6
USP39-212ENST00000465514 ST3GAL2Q16842 350 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 IQCA1Q86XH1 822 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 ADGRF4Q8IZF3 695 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 KLHL23Q8NBE8 558 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 POF1BQ8WVV4 589 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 ZNF689Q96CS4 500 aaPredicted RBP11.32□□□□□ -0.6
USP39-212ENST00000465514 TAAR1Q96RJ0 339 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 ZSCAN10Q96SZ4 725 aaPredicted RBP11.32□□□□□ -0.6
USP39-212ENST00000465514 TLE6Q9H808 572 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 KAT14Q9H8E8 782 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms