RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 SLBPQ14493 270 aaKnown RBP eCLIP5.66□□□□□ -1.5
CSMD3-205ENST00000462254 TMEM67Q5HYA8 995 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 ZMYM1Q5SVZ6 1142 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 KIF6Q6ZMV9 814 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 CDC37L1Q7L3B6 337 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 DEFB132Q7Z7B7 95 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 LINS1Q8NG48 757 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 ZNF507Q8TCN5 953 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 FERD3LQ96RJ6 166 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 CAMKK2Q96RR4 588 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 MPHOSPH6Q99547 160 aaKnown RBP5.66□□□□□ -1.5
CSMD3-205ENST00000462254 USP44Q9H0E7 712 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 ZMYM5Q9UJ78 669 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 POLR3KQ9Y2Y1 108 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-205ENST00000462254 KIF13BQ9NQT8 1826 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 UBN2Q6ZU65 1347 aa5.66□□□□□ -1.5
CSMD3-205ENST00000462254 ARAP2Q8WZ64 1704 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 BRCA1P38398 1863 aaKnown RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 MYO5AQ9Y4I1 1855 aaKnown RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 A0A087X0B3 334 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 ERVV-1B6SEH8 477 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 WDHD1O75717 1129 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 RASGRP1O95267 797 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 GJB6O95452 261 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 BPNT1O95861 308 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 SCGB1D2O95969 90 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 NBPF7P0C2Y1 421 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 FAM87AP0C7U9 286 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 IMPDH2P12268 514 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 SSRP1Q08945 709 aaKnown RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 NEXNQ0ZGT2 675 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 TCIRG1Q13488 830 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 BRD3Q15059 726 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 LONRF2Q1L5Z9 754 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 SEZ6Q53EL9 994 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 CT47A1Q5JQC4 288 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 LARP1BQ659C4 914 aaKnown RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 OGFOD3Q6PK18 319 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 SPATC1Q76KD6 591 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 RBBP8NLQ8NC74 664 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 ISCA1Q9BUE6 129 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 DUSP23Q9BVJ7 150 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 OSBPL1AQ9BXW6 950 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 SRP68Q9UHB9 627 aaKnown RBP5.65□□□□□ -1.5
CSMD3-205ENST00000462254 PFDN2Q9UHV9 154 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 RNF112Q9ULX5 631 aa5.65□□□□□ -1.5
CSMD3-205ENST00000462254 LRP5O75197 1615 aa5.65□□□□□ -1.51
CSMD3-205ENST00000462254 UTYO14607 1347 aa5.65□□□□□ -1.51
CSMD3-205ENST00000462254 USP42Q9H9J4 1324 aaKnown RBP5.65□□□□□ -1.51
CSMD3-205ENST00000462254 KIAA1551Q9HCM1 1747 aa5.65□□□□□ -1.51
CSMD3-205ENST00000462254 SHTN1A0MZ66 631 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 GRM8O00222 908 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 RFPL3O75679 317 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 IGHDP01880 384 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 PGRP06401 933 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 GPTP24298 496 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 SSTR4P31391 388 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ZNF165P49910 485 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 MPP2Q14168 576 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 GCKRQ14397 625 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ZRSR2Q15696 482 aaKnown RBP5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ZC3H12BQ5HYM0 836 aaKnown RBP5.64□□□□□ -1.51
CSMD3-205ENST00000462254 SYCP2LQ5T4T6 812 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 CEP85Q6P2H3 762 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ARMCX6Q7L4S7 300 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 REC114Q7Z4M0 266 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 RNF180Q86T96 592 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 HID1Q8IV36 788 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 SIRT2Q8IXJ6 389 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ZNF34Q8IZ26 560 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 REXO1Q8N1G1 1221 aaKnown RBP5.64□□□□□ -1.51
CSMD3-205ENST00000462254 MYO1HQ8N1T3 1032 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 TOP6BLQ8N6T0 577 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ACSF2Q96CM8 615 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-205ENST00000462254 KAZALD1Q96I82 304 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 SUCLG2Q96I99 432 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 DPH2Q9BQC3 489 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-205ENST00000462254 SENP7Q9BQF6 1050 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 TNKS2Q9H2K2 1166 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 TJP2Q9UDY2 1190 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 NARFQ9UHQ1 456 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 ZNRF3Q9ULT6 936 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 LRRFIP2Q9Y608 721 aaKnown RBP5.64□□□□□ -1.51
CSMD3-205ENST00000462254 TACC3Q9Y6A5 838 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 U3KQE9 123 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 PNPLA7Q6ZV29 1317 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 MYH7P12883 1935 aa5.64□□□□□ -1.51
CSMD3-205ENST00000462254 LRRC37AA6NMS7 1700 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 A0A087WZG4 1122 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 CCDC163A0A0D9SF12 145 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 UPK3BL1B0FP48 263 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 UPK3BL2E5RIL1 263 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 PDE8AO60658 829 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 GNAI3P08754 354 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 UBTFL1P0CB47 393 aaPredicted RBP5.63□□□□□ -1.51
CSMD3-205ENST00000462254 LRRC41Q15345 812 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 HSP90AB3PQ58FF7 597 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 EPHA10Q5JZY3 1008 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 PRAMEF13Q5VWM6 474 aa5.63□□□□□ -1.51
CSMD3-205ENST00000462254 TBC1D9BQ66K14 1250 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms