RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 FOXP3Q9BZS1 431 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 TRIM6Q9C030 488 aaPredicted RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 ZNF700Q9H0M5 742 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 KMT5AQ9NQR1 393 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 COMMD8Q9NX08 183 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 DDX41Q9UJV9 622 aaKnown RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 KCTD3Q9Y597 815 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 PHLDB1Q86UU1 1377 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 KIAA0556O60303 1618 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 NEO1Q92859 1461 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 WASHC2CQ9Y4E1 1318 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 GTPBP10A4D1E9 387 aaKnown RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 KLHL33A6NCF5 533 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 PRRT4C9JH25 899 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 TCEA3O75764 348 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 UBOX5O94941 541 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 EFEMP2O95967 443 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 BMP7P18075 431 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 BUD31P41223 144 aaPredicted RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 HLTFQ14527 1009 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS41-209ENST00000457055 SLC14A2Q15849 920 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 DDB1Q16531 1140 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 ACBD5Q5T8D3 534 aaPredicted RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 TCERG1LQ5VWI1 586 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 CPLX2Q6PUV4 134 aaKnown RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 CEP128Q6ZU80 1094 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 TMC3Q7Z5M5 1100 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 MTERF4Q7Z6M4 381 aaKnown RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 USHBP1Q8N6Y0 703 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 ZNF655Q8N720 491 aaPredicted RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 DAGLBQ8NCG7 672 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 PPHLN1Q8NEY8 458 aaKnown RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 E2F7Q96AV8 911 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 TBC1D31Q96DN5 1066 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 TCTN2Q96GX1 697 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 MAP6Q96JE9 813 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 RNPC3Q96LT9 517 aaKnown RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 AGAP3Q96P47 875 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 GPR101Q96P66 508 aaPredicted RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 XPO4Q9C0E2 1151 aaKnown RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 ZCCHC4Q9H5U6 513 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 PARD6AQ9NPB6 346 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 KBTBD4Q9NVX7 518 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 TCFL5Q9UL49 500 aa6.28□□□□□ -1.4
VPS41-209ENST00000457055 DENND4BO75064 1496 aaPredicted RBP6.28□□□□□ -1.4
VPS41-209ENST00000457055 IL16Q14005 1332 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 ABCA8O94911 1581 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 ZFYVE16Q7Z3T8 1539 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 FAM170AA1A519 330 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 SLC22A31A6NKX4 558 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 TMEM110-MUSTN1A8MSY1 372 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 TSPAN6O43657 245 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 OAS2P29728 719 aaKnown RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 KIF5BP33176 963 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 ITGAEP38570 1179 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 KIR2DL1P43626 348 aaPredicted RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 KIR2DL2P43627 348 aaPredicted RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 PPM1FP49593 454 aaPredicted RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 PCBP3P57721 371 aaKnown RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 ZBED6P86452 979 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 USP48Q86UV5 1035 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 C11orf74Q86VG3 221 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 N4BP2L2Q92802 583 aaPredicted RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 TEKT1Q969V4 418 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 SELENOOQ9BVL4 669 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 GTPBP4Q9BZE4 634 aaKnown RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS41-209ENST00000457055 DCAF16Q9NXF7 216 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 GMIPQ9P107 970 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.27□□□□□ -1.41
VPS41-209ENST00000457055 KNSTRNQ9Y448 316 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 PCDHB14Q9Y5E9 798 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 HECW1Q76N89 1606 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 CARMIL1Q5VZK9 1371 aa6.27□□□□□ -1.41
VPS41-209ENST00000457055 KIF16BQ96L93 1317 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 PRSS47A8MTI9 375 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 FKTNO75072 461 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 MSL3P1P0C860 447 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 POLR2BP30876 1174 aaKnown RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 SRSF3P84103 164 aaKnown RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 SNW1Q13573 536 aaKnown RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 SSPNQ14714 243 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 SLMAPQ14BN4 828 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 HYIQ5T013 277 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 LDLRAD1Q5T700 205 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 NBPF12Q5TAG4 269 aaPredicted RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 ANKRD45Q5TZF3 282 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 JAKMIP3Q5VZ66 844 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 LMBRD2Q68DH5 695 aaPredicted RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 OVOS1Q6IE37 1185 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 TAX1BP1Q86VP1 789 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 CPXCR1Q8N123 301 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 CLASRPQ8N2M8 674 aaKnown RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 ZFPM2Q8WW38 1151 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 C20orf173Q96LM9 149 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 ZNF396Q96N95 335 aaPredicted RBP6.26□□□□□ -1.41
VPS41-209ENST00000457055 LRRC3Q9BY71 257 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.26□□□□□ -1.412e-7■■■■□ 22.5
VPS41-209ENST00000457055 RMI1Q9H9A7 625 aa6.26□□□□□ -1.41
VPS41-209ENST00000457055 BRMS1Q9HCU9 246 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms