RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 MTFR1LQ9H019 292 aa13.05□□□□□ -0.32
VTA1-203ENST00000452973 CTDP1Q9Y5B0 961 aaPredicted RBP13.05□□□□□ -0.32
VTA1-203ENST00000452973 SPDYE4A6NLX3 237 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 PRPF6O94906 941 aaKnown RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 PRKG1Q13976 671 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 MAN2A1Q16706 1144 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 COBLL1Q53SF7 1204 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 MTERF4Q7Z6M4 381 aaKnown RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 ZKSCAN4Q969J2 545 aaPredicted RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 RUSC1Q9BVN2 902 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 EPC1Q9H2F5 836 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 CYP3A4P08684 503 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 CYP27A1Q02318 531 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 SPP2Q13103 211 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 OTOP1Q7RTM1 612 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 SLC35F6Q8N357 371 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 SYT2Q8N9I0 419 aaPredicted RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 PRPF38AQ8NAV1 312 aaKnown RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 ZNF397Q8NF99 534 aaPredicted RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 DNAJC7Q99615 494 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 COL4A3BPQ9Y5P4 624 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 TULP1O00294 542 aaPredicted RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 PLEKP08567 350 aaPredicted RBP13.04□□□□□ -0.32
VTA1-203ENST00000452973 ADAM9Q13443 819 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 KIF4BQ2VIQ3 1234 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 UBXN4Q92575 508 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 NUP58Q9BVL2 599 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 NLRC4Q9NPP4 1024 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 PCDHA2Q9Y5H9 948 aa13.04□□□□□ -0.32
VTA1-203ENST00000452973 PSME4Q14997 1843 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 TBCAO75347 108 aaKnown RBP13.03□□□□□ -0.32
VTA1-203ENST00000452973 TFRCP02786 760 aaKnown RBP13.03□□□□□ -0.32
VTA1-203ENST00000452973 MYBP10242 640 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 APBA1Q02410 837 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 MAEAQ7L5Y9 396 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 COL20A1Q9P218 1284 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 SLITRK3O94933 977 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 GCNT3O95395 438 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 PRELPP51888 382 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 ZBED6P86452 979 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 RRAGAQ7L523 313 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 KIAA1328Q86T90 577 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 BANK1Q8NDB2 785 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 IL31RAQ8NI17 732 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 PURBQ96QR8 312 aaKnown RBP13.03□□□□□ -0.32
VTA1-203ENST00000452973 ERGIC2Q96RQ1 377 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 TTYH3Q9C0H2 523 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 IKZF4Q9H2S9 585 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 EHMT1Q9H9B1 1298 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 NHEJ1Q9H9Q4 299 aaPredicted RBP13.03□□□□□ -0.32
VTA1-203ENST00000452973 REXO2Q9Y3B8 237 aaKnown RBP13.03□□□□□ -0.32
VTA1-203ENST00000452973 SAMM50Q9Y512 469 aa13.03□□□□□ -0.32
VTA1-203ENST00000452973 IPO5O00410 1097 aaKnown RBP13.02□□□□□ -0.32
VTA1-203ENST00000452973 ICAM1P05362 532 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 FECHP22830 423 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 NR2F2P24468 414 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 PTGER2P43116 358 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 KCNA1Q09470 495 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 ENOX2Q16206 610 aaKnown RBP13.02□□□□□ -0.32
VTA1-203ENST00000452973 MUM1L1Q5H9M0 696 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 CACNA2D4Q7Z3S7 1137 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 SH2D3AQ9BRG2 576 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 WDR11Q9BZH6 1224 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 ZNF536O15090 1300 aa13.02□□□□□ -0.32
VTA1-203ENST00000452973 PSMD10O75832 226 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 IPO7O95373 1038 aaKnown RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 EIF2AK2P19525 551 aaKnown RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 EPS15P42566 896 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 ZCWPW2Q504Y3 356 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 TEX35Q5T0J7 233 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 ANGEL2Q5VTE6 544 aaKnown RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 NSMFQ6X4W1 530 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 KRT26Q7Z3Y9 468 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 UNC45AQ9H3U1 944 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 PUF60Q9UHX1 559 aaKnown RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 CLIC2O15247 247 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 MYCLP12524 364 aaPredicted RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 MAP3K9P80192 1104 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 PPP2R3AQ06190 1150 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 CCDC122Q5T0U0 273 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 FBXO38Q6PIJ6 1188 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 KSR1Q8IVT5 923 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 MYCT1Q8N699 235 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 NLGN2Q8NFZ4 835 aa13.02□□□□□ -0.33
VTA1-203ENST00000452973 RPAP3Q9H6T3 665 aaPredicted RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 WRAP73Q9P2S5 460 aaPredicted RBP13.02□□□□□ -0.33
VTA1-203ENST00000452973 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.02□□□□□ -0.33
VTA1-203ENST00000452973 ITGB5P18084 799 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 VCAM1P19320 739 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 ARHGAP25P42331 645 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 ZNF280AP59817 542 aaPredicted RBP13.01□□□□□ -0.33
VTA1-203ENST00000452973 PLS1Q14651 629 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 RINT1Q6NUQ1 792 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 RETREG2Q8NC44 543 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 NEK11Q8NG66 645 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 WNK4Q96J92 1243 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 CCDC42Q96M95 316 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 WRNIP1Q96S55 665 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 HSD17B14Q9BPX1 270 aa13.01□□□□□ -0.33
VTA1-203ENST00000452973 KCTD10Q9H3F6 313 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms