RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 CAGE1Q8TC20 777 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 CRYGNQ8WXF5 182 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 TMX3Q96JJ7 454 aa18.57■□□□□ 0.56
SF3A1-204ENST00000447376 NOC4LQ9BVI4 516 aaKnown RBP18.57■□□□□ 0.56
SF3A1-204ENST00000447376 MTIF3Q9H2K0 278 aaKnown RBP18.57■□□□□ 0.56
SF3A1-204ENST00000447376 PITPNM1O00562 1244 aa18.56■□□□□ 0.56
SF3A1-204ENST00000447376 ITGB8P26012 769 aa18.56■□□□□ 0.56
SF3A1-204ENST00000447376 FAM160B1Q5W0V3 765 aa18.56■□□□□ 0.56
SF3A1-204ENST00000447376 GDF6Q6KF10 455 aaPredicted RBP18.56■□□□□ 0.56
SF3A1-204ENST00000447376 PSRC1Q6PGN9 363 aaPredicted RBP18.56■□□□□ 0.56
SF3A1-204ENST00000447376 RPUSD2Q8IZ73 545 aaKnown RBP18.56■□□□□ 0.56
SF3A1-204ENST00000447376 PPP1R13LQ8WUF5 828 aa18.56■□□□□ 0.56
SF3A1-204ENST00000447376 DOCK5Q9H7D0 1870 aa18.56■□□□□ 0.56
SF3A1-204ENST00000447376 EMSYQ7Z589 1322 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 IGLV3-22A0A075B6J6 115 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 DDX39AO00148 427 aaKnown RBP18.55■□□□□ 0.56
SF3A1-204ENST00000447376 BACH1O14867 736 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 JAK2O60674 1132 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 SMIM10L2AP0DMW4 78 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 SMIM10L2BP0DMW5 78 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 CCL23P55773 120 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 ACTR2P61160 394 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 KRT76Q01546 638 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 PTK7Q13308 1070 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 TRIM50Q86XT4 487 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 ATP6V0A1Q93050 837 aa18.55■□□□□ 0.56
SF3A1-204ENST00000447376 GSTTP1A0A1W2PQM5 241 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 ADAMTS3O15072 1205 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 MARCH6O60337 910 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 CD2BP2O95400 341 aaKnown RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 PARNO95453 639 aaKnown RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 FDPSP14324 419 aaKnown RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 CSF2RAP15509 400 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 GCFC2P16383 781 aaKnown RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 RFC2P35250 354 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 SLC26A2P50443 739 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 ITGB3BPQ13352 177 aaPredicted RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 GNL2Q13823 731 aaKnown RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 INF2Q27J81 1249 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 MIS18BP1Q6P0N0 1132 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 MOXD1Q6UVY6 613 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 NEK8Q86SG6 692 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 SMAP1Q8IYB5 467 aaPredicted RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 AFAP1L1Q8TED9 768 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 C8orf76Q96K31 380 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 RNPC3Q96LT9 517 aaKnown RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 IL23AQ9NPF7 189 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 PCDH10Q9P2E7 1040 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 SAMM50Q9Y512 469 aa18.54■□□□□ 0.56
SF3A1-204ENST00000447376 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.54■□□□□ 0.56
SF3A1-204ENST00000447376 NRCAMQ92823 1304 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 M0R2N6 131 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 GAS7O60861 476 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 MMP1P03956 469 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 PFKMP08237 780 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 MARK3P27448 753 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 STAT5BP51692 787 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 FOSBP53539 338 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 ST3GAL1Q11201 340 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 LETM2Q2VYF4 491 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 LRIT3Q3SXY7 679 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 Q4G0T1 1027 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 ZNF746Q6NUN9 644 aaPredicted RBP18.53■□□□□ 0.56
SF3A1-204ENST00000447376 PIK3AP1Q6ZUJ8 805 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 RIT2Q99578 217 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 TEKT3Q9BXF9 490 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 TRPC6Q9Y210 931 aa18.53■□□□□ 0.56
SF3A1-204ENST00000447376 DTNBO60941 627 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 PSAPP07602 524 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 ACTN1P12814 892 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 PPFIA1Q13136 1202 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 SHHQ15465 462 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 NPY5RQ15761 445 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 LRCH2Q5VUJ6 765 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 KRT40Q6A162 431 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 PLPPR4Q7Z2D5 763 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 DIS3L2Q8IYB7 885 aaKnown RBP18.52■□□□□ 0.56
SF3A1-204ENST00000447376 RNPEPQ9H4A4 650 aa18.52■□□□□ 0.56
SF3A1-204ENST00000447376 DDX25Q9UHL0 483 aaKnown RBP18.52■□□□□ 0.56
SF3A1-204ENST00000447376 UMODL1Q5DID0 1318 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 CYP3A7-CYP3A51PA0A087WV96 503 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 RRN3P2A6NIE6 340 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 MSH4O15457 936 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 CCNT1O60563 726 aaKnown RBP18.51■□□□□ 0.55
SF3A1-204ENST00000447376 LGR5O75473 907 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 FGBP02675 491 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 SELPP16109 830 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 CYP3A7P24462 503 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 RSPH3Q86UC2 560 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 CKAP2LQ8IYA6 745 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 SNX21Q969T3 373 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 SCLYQ96I15 445 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 ZNF302Q9NR11 478 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 GJB4Q9NTQ9 266 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 SETD4Q9NVD3 440 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 PCDHA10Q9Y5I2 948 aa18.51■□□□□ 0.55
SF3A1-204ENST00000447376 WDR64B1ANS9 1081 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 CAND2O75155 1236 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 ATG7O95352 703 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 BAG4O95429 457 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms