RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 CCDC170Q8IYT3 715 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 MAGEB5Q9BZ81 275 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 RIMS1Q86UR5 1692 aaKnown RBP9.25□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF853P0CG23 659 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 BRD3Q15059 726 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 DNAJC24Q6P3W2 148 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 THAP9Q9H5L6 903 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 VPS37BQ9H9H4 285 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 ZHX2Q9Y6X8 837 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 RIMBP3CA6NJZ7 1639 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 RIMBP3BA6NNM3 1639 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 RIMBP3Q9UFD9 1639 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 H7C0C1 242 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 SLC25A27O95847 323 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 SKIP12755 728 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 ATP5OP48047 213 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 TOGARAM2Q6ZUX3 1019 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 PCDHB8Q9UN66 801 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 IKBKBO14920 756 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 RGS16O15492 202 aaPredicted RBP9.25□□□□□ -0.93
PTPN3-204ENST00000446349 CPA1P15085 419 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 TFAMQ00059 246 aaKnown RBP9.25□□□□□ -0.93
PTPN3-204ENST00000446349 CEP85LQ5SZL2 805 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 XRRA1Q6P2D8 792 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 LRRC31Q6UY01 552 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 NLRC4Q9NPP4 1024 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 SRPRBQ9Y5M8 271 aaKnown RBP9.25□□□□□ -0.93
PTPN3-204ENST00000446349 CDC25BP30305 580 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 PGBD4Q96DM1 585 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 PBKQ96KB5 322 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 CNOT6LQ96LI5 555 aaKnown RBP9.25□□□□□ -0.93
PTPN3-204ENST00000446349 APOL6Q9BWW8 343 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 BLZF1Q9H2G9 400 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 E9PCH4 1651 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 GDF11O95390 407 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 GOLGA8HP0CJ92 632 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 MXI1P50539 228 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 PRELPP51888 382 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 TRERF1Q96PN7 1200 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 PLA2G12BQ9BX93 195 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 RWDD2AQ9UIY3 292 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 ANGPTL3Q9Y5C1 460 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 PFASO15067 1338 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 BTBD18B2RXH4 712 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 KCNJ6P48051 423 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 LSG1Q9H089 658 aaKnown RBP9.25□□□□□ -0.93
PTPN3-204ENST00000446349 SEC31BQ9NQW1 1179 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF212Q9UDV6 495 aa9.25□□□□□ -0.93
PTPN3-204ENST00000446349 CD163L1Q9NR16 1453 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 HUS1O60921 280 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 EFNA5P52803 228 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CTAGE3PQ8IX95 158 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 ACAP3Q96P50 834 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 PPP1R2P1Q96PQ5 205 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 AP3B1O00203 1094 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 PRPSAP2O60256 369 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 GH2P01242 217 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 SFSWAPQ12872 951 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 IQCB1Q15051 598 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MTERF2Q49AM1 385 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 TRIM72Q6ZMU5 477 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MIGA2Q7L4E1 593 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 RYBPQ8N488 228 aaPredicted RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 TUBGCP2Q9BSJ2 902 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CASQ2O14958 399 aaPredicted RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 PLA2G4BP0C869 781 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CYP19A1P11511 503 aaPredicted RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MAPK4P31152 587 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 PTPN12Q05209 780 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 PNOCQ13519 176 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF667Q5HYK9 610 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 TTC13Q8NBP0 860 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 OTUD7AQ8TE49 926 aaPredicted RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 USP11P51784 963 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CYP4A11Q02928 519 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 FAM149B1Q96BN6 582 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 SDCCAG3Q96C92 435 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF560Q96MR9 790 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MTRQ99707 1265 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MSTO1Q9BUK6 570 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF148Q9UQR1 794 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MAFGO15525 162 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CLDN3O15551 220 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 ENTPD3O75355 529 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 IFNB1P01574 187 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 SLFN14P0C7P3 912 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 POLR2FP61218 127 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CCDC15Q0P6D6 951 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 LRMPQ12912 555 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MTX1Q13505 466 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 KLC3Q6P597 504 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 RPUSD2Q8IZ73 545 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 IPO5O00410 1097 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 SAMD3Q8N6K7 520 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF579Q8NAF0 562 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 MRPL4Q9BYD3 311 aaKnown RBP9.24□□□□□ -0.93
PTPN3-204ENST00000446349 VPS18Q9P253 973 aa9.24□□□□□ -0.93
PTPN3-204ENST00000446349 CBX1P83916 185 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms