RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TMOD2Q9NZR1 351 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 ADAMTS1Q9UHI8 967 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 SUGT1Q9Y2Z0 365 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CAPN6Q9Y6Q1 641 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 MYH1P12882 1939 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 ESYT3A0FGR9 886 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CTAGE9A4FU28 777 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 GOLGA8IPA6NC78 632 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 LRRC10BA6NIK2 292 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 GOLGA8JA6NMD2 632 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 TADA3O75528 432 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 TRIM49P0CI25 452 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 TRIM49CP0CI26 452 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 USP8P40818 1118 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 NOVP48745 357 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CXCL9Q07325 125 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 BMS1Q14692 1282 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 CCDC93Q567U6 631 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 NFRKBQ6P4R8 1299 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CYP26C1Q6V0L0 522 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 PPP1R13LQ8WUF5 828 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 HDAC7Q8WUI4 952 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 AK8Q96MA6 479 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 AMNQ9BXJ7 453 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 NAA15Q9BXJ9 866 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 ZNF70Q9UC06 446 aaPredicted RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 NR2F2P24468 414 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 RASA3Q14644 834 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 GRIPAP1Q4V328 841 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 MYOCDQ8IZQ8 938 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 MYCT1Q8N699 235 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 COG1Q8WTW3 980 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 JAKMIP2Q96AA8 810 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 WDR18Q9BV38 432 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 WDR11Q9BZH6 1224 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 CUEDC2Q9H467 287 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 EMILIN3Q9NT22 766 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 ARHGAP20Q9P2F6 1191 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 RGS17Q9UGC6 210 aaPredicted RBP9.25□□□□□ -0.93
CD44-208ENST00000428726 SCN9AQ15858 1988 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 IGKV6D-41A0A0C4DH26 115 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 hCG_1984214I3L0E3 225 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 AMPD3Q01432 767 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 KCNB1Q14721 858 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 ARHGAP44Q17R89 818 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 CC2D2BQ6DHV5 1058 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 TTC19Q6DKK2 380 aaPredicted RBP9.25□□□□□ -0.93
CD44-208ENST00000428726 CNNM4Q6P4Q7 775 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 HHIPL2Q6UWX4 724 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 TTLL6Q8N841 843 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 ZNF713Q8N859 430 aaPredicted RBP9.25□□□□□ -0.93
CD44-208ENST00000428726 MAGEF1Q9HAY2 307 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 ZNHIT6Q9NWK9 470 aaKnown RBP9.25□□□□□ -0.93
CD44-208ENST00000428726 MRFAP1Q9Y605 127 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 ITIH6Q6UXX5 1313 aa9.25□□□□□ -0.93
CD44-208ENST00000428726 ZSCAN5CA6NGD5 496 aaPredicted RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 PDE2AO00408 941 aaPredicted RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 CYP11B2P19099 503 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 STAT2P52630 851 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 VSNL1P62760 191 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 MAP3K9P80192 1104 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 ORC2Q13416 577 aaPredicted RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 SLX4Q8IY92 1834 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 SCFD1Q8WVM8 642 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 DNAJC19Q96DA6 116 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 CCDC51Q96ER9 411 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 PLIN4Q96Q06 1357 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 FOCADQ5VW36 1801 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 LRRC37AA6NMS7 1700 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 ESYT2A0FGR8 921 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 TESPA1A2RU30 521 aaPredicted RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 WNT10BO00744 389 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 IPO7O95373 1038 aaKnown RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 H2AFXP16104 143 aaPredicted RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 SPP2Q13103 211 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 R3HDM1Q15032 1099 aaKnown RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 VWA3BQ502W6 1294 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 GPATCH4Q5T3I0 446 aaKnown RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 NAA35Q5VZE5 725 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 ZNF507Q8TCN5 953 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 ABCB6Q9NP58 842 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 AJAP1Q9UKB5 411 aaPredicted RBP9.24□□□□□ -0.93
CD44-208ENST00000428726 LTBP1Q14766 1721 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 MYH10P35580 1976 aa9.24□□□□□ -0.93
CD44-208ENST00000428726 FLOT1O75955 427 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 SNHG28P0DPA3 235 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 ABCB4P21439 1286 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 NPEPPSP55786 919 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 IRX5P78411 483 aaPredicted RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 KCNMA1Q12791 1236 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 SMC1AQ14683 1233 aaKnown RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 TRADDQ15628 312 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 NBPF12Q5TAG4 269 aaPredicted RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 PLA2G4FQ68DD2 849 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 RAB34Q9BZG1 259 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 COL20A1Q9P218 1284 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 SPDYE2BA6NHP3 402 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 TRIM66O15016 1216 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 SPDYE6P0CI01 402 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 SPATA31C1P0DKV0 1188 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms