RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 CYP2J2P51589 502 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 SOX10P56693 466 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 NFRKBQ6P4R8 1299 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 C7orf43Q8WVR3 580 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 DHX36Q9H2U1 1008 aaKnown RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 ADAMTS1Q9UHI8 967 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 ESYT2A0FGR8 921 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 FTCDO95954 541 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 NOVP48745 357 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 PDE4CQ08493 712 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 LRRC55Q6ZSA7 311 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 MYCT1Q8N699 235 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 ZSWIM2Q8NEG5 633 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 COG1Q8WTW3 980 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 GOLGA1Q92805 767 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 LENG9Q96B70 501 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 IFIH1Q9BYX4 1025 aaKnown RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 RABEP2Q9H5N1 569 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 KCND1Q9NSA2 647 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 CDC23Q9UJX2 597 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 MYO6Q9UM54 1294 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 EFCAB8A8MWE9 144 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 EIF2AK2P19525 551 aaKnown RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 CXCL9Q07325 125 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 CERS3Q8IU89 383 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 EIF2AK1Q9BQI3 630 aaKnown RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 ANKZF1Q9H8Y5 726 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 ABCB6Q9NP58 842 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 RGS17Q9UGC6 210 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 DNM3Q9UQ16 869 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 MAST2Q6P0Q8 1798 aa13.19□□□□□ -0.3
PTPRN-204ENST00000423636 COL11A2P13942 1736 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 GRIPAP1Q4V328 841 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 PPP4R3AQ6IN85 833 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 TATDN1Q6P1N9 297 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 KRT222Q8N1A0 295 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 HDAC7Q8WUI4 952 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 RIN2Q8WYP3 895 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 IDI2Q9BXS1 227 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 WDR11Q9BZH6 1224 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 NYAP2Q9P242 653 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 TNNT3P45378 269 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 KCNJ6P48051 423 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 KIF11P52732 1056 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 TMEM119Q4V9L6 283 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 LRCH2Q5VUJ6 765 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 RSBN1LQ6PCB5 846 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 NSMFQ6X4W1 530 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 NEK11Q8NG66 645 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 ZKSCAN4Q969J2 545 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 SERPINA10Q9UK55 444 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 WNT10BO00744 389 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 TRIM49P0CI25 452 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 TRIM49CP0CI26 452 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 RASA3Q14644 834 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 SPA17Q15506 151 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 PPP1R18Q6NYC8 613 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 CC2D1AQ6P1N0 951 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 SRGAP1Q7Z6B7 1085 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 ETNPPLQ8TBG4 499 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 TSG101Q99816 390 aa13.18□□□□□ -0.3
PTPRN-204ENST00000423636 AJAP1Q9UKB5 411 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-204ENST00000423636 GIT2Q14161 759 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 CCDC65Q8IXS2 484 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 DNAJC7Q99615 494 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 TTYH3Q9C0H2 523 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 SEPT11Q9NVA2 429 aaKnown RBP13.17□□□□□ -0.3
PTPRN-204ENST00000423636 COL20A1Q9P218 1284 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 ITIH6Q6UXX5 1313 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 CTAGE15A4D2H0 777 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 CTAGE8P0CG41 777 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 HOXD13P35453 343 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 ZBED6P86452 979 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 PDIA5Q14554 519 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 CTAGE6Q86UF2 777 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 CTAGE4Q8IX94 777 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 NAA15Q9BXJ9 866 aaKnown RBP13.17□□□□□ -0.3
PTPRN-204ENST00000423636 KCNMB3Q9NPA1 279 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 STK17AQ9UEE5 414 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 SIK3Q9Y2K2 1263 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 COL4A3BPQ9Y5P4 624 aa13.17□□□□□ -0.3
PTPRN-204ENST00000423636 TBC1D8O95759 1140 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 SPIRE1Q08AE8 756 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 KCNH2Q12809 1159 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 MKRN4PQ13434 485 aaPredicted RBP13.16□□□□□ -0.3
PTPRN-204ENST00000423636 ZNF772Q68DY9 489 aaPredicted RBP13.16□□□□□ -0.3
PTPRN-204ENST00000423636 LDHDQ86WU2 507 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 HOOK2Q96ED9 719 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 KIFC3Q9BVG8 833 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 GPRC5CQ9NQ84 441 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 SUGT1Q9Y2Z0 365 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 GOLGA6L9A6NEM1 432 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 TLR2O60603 784 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 GAS7O60861 476 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 AKAP3O75969 853 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 MAGEA1P43355 309 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 SLC12A3P55017 1021 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 FKBP3Q00688 224 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms