RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CDCA2Q69YH5 1023 aaPredicted RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 BZW1Q7L1Q6 419 aaKnown RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 CCHCR1Q8TD31 782 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 ZNF483Q8TF39 744 aaPredicted RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 TCP11Q8WWU5 503 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 THOC1Q96FV9 657 aaKnown RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 L3MBTL3Q96JM7 780 aaPredicted RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 MYH4Q9Y623 1939 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 CEP104O60308 925 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 ANP32DO95626 131 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 ALADP13716 330 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 KIF5BP33176 963 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 ZNF268Q14587 947 aaPredicted RBP11.71□□□□□ -0.53
USP54-204ENST00000422491 KCTD19Q17RG1 926 aaPredicted RBP11.71□□□□□ -0.53
USP54-204ENST00000422491 FAM47AQ5JRC9 791 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 UNC13DQ70J99 1090 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 LRRC57Q8N9N7 239 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 ATXN2LQ8WWM7 1075 aaKnown RBP11.71□□□□□ -0.53
USP54-204ENST00000422491 TXLNGYQ9BZA5 131 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 GOLPH3Q9H4A6 298 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 ADAMTS1Q9UHI8 967 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 KCNG1Q9UIX4 513 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 NOC2LQ9Y3T9 749 aaKnown RBP11.71□□□□□ -0.53
USP54-204ENST00000422491 L3MBTL1Q9Y468 752 aa11.71□□□□□ -0.53
USP54-204ENST00000422491 PVALEFA0A1B0GWK0 134 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 CFAP73A6NFT4 308 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 MYMKA6NI61 221 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 USP17L12C9JPN9 530 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 USP17L21D6R901 530 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 PGRMC1O00264 195 aaKnown RBP11.71□□□□□ -0.54
USP54-204ENST00000422491 INHBEP58166 350 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 POLR2FP61218 127 aaKnown RBP11.71□□□□□ -0.54
USP54-204ENST00000422491 DHX9Q08211 1270 aaKnown RBP11.71□□□□□ -0.54
USP54-204ENST00000422491 TMED8Q6PL24 325 aaPredicted RBP11.71□□□□□ -0.54
USP54-204ENST00000422491 EGFL6Q8IUX8 553 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 ANKS4BQ8N8V4 417 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 LMBR1Q8WVP7 490 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.71□□□□□ -0.54
USP54-204ENST00000422491 TANGO6Q9C0B7 1094 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 BLOC1S4Q9NUP1 217 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 AMACRQ9UHK6 382 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 PNMA2Q9UL42 364 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 TRPC6Q9Y210 931 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 A0A1B0GUL6 1792 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 CASZ1Q86V15 1759 aa11.71□□□□□ -0.54
USP54-204ENST00000422491 CCDC188H7C350 402 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 CLTAP09496 248 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 FOXR2Q6PJQ5 311 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 METTL13Q8N6R0 699 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 ARMC2Q8NEN0 867 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 AGAP11Q8TF27 550 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 ZNF570Q96NI8 536 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP54-204ENST00000422491 LSM14BQ9BX40 385 aaKnown RBP11.7□□□□□ -0.54
USP54-204ENST00000422491 ADAM7Q9H2U9 754 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 AIPL1Q9NZN9 384 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 ABCF2Q9UG63 623 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 AFF2P51816 1311 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 CAND2O75155 1236 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 PPFIA2O75334 1257 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 MMEP08473 750 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 ITGA4P13612 1032 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 CHN1P15882 459 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 EIF3BP55884 814 aaKnown RBP11.7□□□□□ -0.54
USP54-204ENST00000422491 SLC35G1Q2M3R5 365 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 SPDYCQ5MJ68 293 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 GALNT17Q6IS24 598 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 TBC1D1Q86TI0 1168 aaPredicted RBP11.7□□□□□ -0.54
USP54-204ENST00000422491 PNMA8AQ86V59 439 aaPredicted RBP11.7□□□□□ -0.54
USP54-204ENST00000422491 SPDL1Q96EA4 605 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 SLITRK6Q9H5Y7 841 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 PANK4Q9NVE7 773 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 CCDC88AQ3V6T2 1871 aa11.7□□□□□ -0.54
USP54-204ENST00000422491 TTI1O43156 1089 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 GCKP35557 465 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 MMP13P45452 471 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 SLMAPQ14BN4 828 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 ZCWPW2Q504Y3 356 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 SV2BQ7L1I2 683 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 RASGEF1CQ8N431 466 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 GLIS3Q8NEA6 775 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 ACSBG1Q96GR2 724 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 SPAG5Q96R06 1193 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 EPB41L4BQ9H329 900 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 AGAP1Q9UPQ3 857 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 SLIT2O94813 1529 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.69□□□□□ -0.54
USP54-204ENST00000422491 COL1A1P02452 1464 aaPredicted RBP11.69□□□□□ -0.54
USP54-204ENST00000422491 SHANK3Q9BYB0 1731 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 STXBP3O00186 592 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 KRIT1O00522 736 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 TECP42680 631 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 ICA1Q05084 483 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 KLHL30Q0D2K2 578 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 GRB10Q13322 594 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 RAPGEF1Q13905 1077 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 TRPM8Q7Z2W7 1104 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 PROM2Q8N271 834 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 FAM133AQ8N9E0 248 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 ATP8B4Q8TF62 1192 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms