RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 ERO1BQ86YB8 467 aa11.72□□□□□ -0.53
PTCH1-206ENST00000421141 KIF9Q9HAQ2 790 aa11.72□□□□□ -0.53
PTCH1-206ENST00000421141 MTMR4Q9NYA4 1195 aa11.72□□□□□ -0.53
PTCH1-206ENST00000421141 PCDHA7Q9UN72 937 aa11.72□□□□□ -0.53
PTCH1-206ENST00000421141 CCDC66A2RUB6 948 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 RNF8O76064 485 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 ITIH3Q06033 890 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 USP17L6PQ6QN14 398 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 ZDHHC15Q96MV8 337 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 IFT122Q9HBG6 1241 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 MTMR6Q9Y217 621 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 CRCPO75575 148 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 TXNP10599 105 aaKnown RBP11.71□□□□□ -0.53
PTCH1-206ENST00000421141 FAM186BQ8IYM0 893 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 LRRC4Q9HBW1 653 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 NLRC4Q9NPP4 1024 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 RIC8AQ9NPQ8 531 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 CPSF3Q9UKF6 684 aaKnown RBP11.71□□□□□ -0.53
PTCH1-206ENST00000421141 FAM184BQ9ULE4 1060 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 VAV2P52735 878 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 ARHGAP4P98171 946 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 BFSP1Q12934 665 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 CTTNQ14247 550 aaKnown RBP11.71□□□□□ -0.53
PTCH1-206ENST00000421141 TYW1BQ6NUM6 668 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 CASC4Q6P4E1 433 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 PPP1R21Q6ZMI0 780 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 PPP4R3CPQ6ZMV5 832 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 PEX26Q7Z412 305 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 RNF139Q8WU17 664 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 RSAD2Q8WXG1 361 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 GSDMAQ96QA5 445 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 POLIQ9UNA4 740 aa11.71□□□□□ -0.53
PTCH1-206ENST00000421141 BZW2Q9Y6E2 419 aaKnown RBP11.71□□□□□ -0.53
PTCH1-206ENST00000421141 C6orf222P0C671 652 aaPredicted RBP11.71□□□□□ -0.54
PTCH1-206ENST00000421141 DDIT3P35638 169 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 PEX3P56589 373 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 QRICH1Q2TAL8 776 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 SRGAP1Q7Z6B7 1085 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 BANK1Q8NDB2 785 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 GIPC1O14908 333 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 RGS2P41220 211 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 SBK1Q52WX2 424 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 SMC1BQ8NDV3 1235 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 CCT6BQ92526 530 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 IFIH1Q9BYX4 1025 aaKnown RBP11.71□□□□□ -0.54
PTCH1-206ENST00000421141 POLLQ9UGP5 575 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 TSKSQ9UJT2 592 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 QARSP47897 775 aaKnown RBP11.71□□□□□ -0.54
PTCH1-206ENST00000421141 SARNPP82979 210 aaKnown RBP11.71□□□□□ -0.54
PTCH1-206ENST00000421141 KYAT1Q16773 422 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 RINT1Q6NUQ1 792 aa11.71□□□□□ -0.54
PTCH1-206ENST00000421141 TRMT44Q8IYL2 757 aaKnown RBP11.71□□□□□ -0.54
PTCH1-206ENST00000421141 SRPRBQ9Y5M8 271 aaKnown RBP11.71□□□□□ -0.54
PTCH1-206ENST00000421141 USP11P51784 963 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 RNASE9P60153 205 aaKnown RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 SPECC1LQ69YQ0 1117 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 CYB5R4Q7L1T6 521 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 INPP5FQ9Y2H2 1132 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 PFDN6O15212 129 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 BRD1O95696 1058 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 GCLCP48506 637 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 PIDD1Q9HB75 910 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 MYH8P13535 1937 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 XPAP23025 273 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 NSFP46459 744 aaKnown RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 FKBP3Q00688 224 aaKnown RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 GEN1Q17RS7 908 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 BBS5Q8N3I7 341 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 MAP3K20Q9NYL2 800 aaKnown RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 SH3BP5O60239 455 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 ITKQ08881 620 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 USP50Q70EL3 339 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 SECISBP2LQ93073 1101 aaKnown RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 TRIM11Q96F44 468 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 KIAA1586Q9HCI6 787 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 THAP12O43422 761 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 ZNF568Q3ZCX4 644 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 SWSAP1Q6NVH7 229 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 CHST13Q8NET6 341 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 FHDC1Q9C0D6 1143 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 RAB20Q9NX57 234 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 POLRMTO00411 1230 aaKnown RBP11.7□□□□□ -0.54
PTCH1-206ENST00000421141 DTNBO60941 627 aa11.7□□□□□ -0.54
PTCH1-206ENST00000421141 TSPY1Q01534 308 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-206ENST00000421141 PIGOQ8TEQ8 1089 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 SLC9A2Q9UBY0 812 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 AFPP02771 609 aaKnown RBP11.69□□□□□ -0.54
PTCH1-206ENST00000421141 YY1P25490 414 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 IER5Q5VY09 327 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 CBX8Q9HC52 389 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 GABBR1Q9UBS5 961 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 PDIA6Q15084 440 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 BEST2Q8NFU1 509 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 MRPL4Q9BYD3 311 aaKnown RBP11.69□□□□□ -0.54
PTCH1-206ENST00000421141 VCPKMTQ9H867 229 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 AMFRQ9UKV5 643 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 A0A1W2PQ27 194 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 A0A1W2PQ64 194 aa11.69□□□□□ -0.54
PTCH1-206ENST00000421141 A0A1W2PQD8 194 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms