RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 MKNK2Q9HBH9 465 aa8.22□□□□□ -1.09
HMGN1-205ENST00000419378 TXNRD2Q9NNW7 524 aa8.22□□□□□ -1.09
HMGN1-205ENST00000419378 MORF4L1Q9UBU8 362 aa8.22□□□□□ -1.09
HMGN1-205ENST00000419378 NAGPAQ9UK23 515 aa8.22□□□□□ -1.09
HMGN1-205ENST00000419378 A0A0G2JMZ2 1700 aa8.21□□□□□ -1.09
HMGN1-205ENST00000419378 RBBP6Q7Z6E9 1792 aaKnown RBP8.21□□□□□ -1.1
HMGN1-205ENST00000419378 PEX10O60683 326 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 PRDM1O75626 825 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 EEF2P13639 858 aaKnown RBP8.21□□□□□ -1.1
HMGN1-205ENST00000419378 SDSP20132 328 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 RGS19P49795 217 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 SRSF11Q05519 484 aaKnown RBP8.21□□□□□ -1.1
HMGN1-205ENST00000419378 PPARAQ07869 468 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 MCMDC2Q4G0Z9 681 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 PERM1Q5SV97 790 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 CATSPERGQ6ZRH7 1159 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 CCNJLQ8IV13 435 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 RAET1EQ8TD07 263 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 SH3TC2Q8TF17 1288 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 ZNF333Q96JL9 665 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 RBSNQ9H1K0 784 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 RPAP3Q9H6T3 665 aaPredicted RBP8.21□□□□□ -1.1
HMGN1-205ENST00000419378 SH2D4AQ9H788 454 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 KANSL2Q9H9L4 492 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 ZNF287Q9HBT7 754 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 PPP4R2Q9NY27 417 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 TMX2Q9Y320 296 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 PLIN4Q96Q06 1357 aa8.21□□□□□ -1.1
HMGN1-205ENST00000419378 KIAA0100Q14667 2235 aaKnown RBP8.21□□□□□ -1.1
HMGN1-205ENST00000419378 TMEM238LA0A1B0GVL6 79 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 METTL12A8MUP2 240 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 PDE2AO00408 941 aaPredicted RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 SCAMP3O14828 347 aaKnown RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 SLC3A2P08195 630 aaKnown RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 GSPT1P15170 499 aaKnown RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 FLT3LGP49771 235 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 ERVK-24P63145 666 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 KIAA1755Q5JYT7 1200 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 TTC22Q5TAA0 569 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 MEI1Q5TIA1 1274 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 LBX2Q6XYB7 198 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 NBPF11Q86T75 865 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 ZNF589Q86UQ0 364 aaPredicted RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 SPICE1Q8N0Z3 855 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 GOLGA6L1Q8N7Z2 621 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 TMEM102Q8N9M5 508 aaPredicted RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 GPRC5AQ8NFJ5 357 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 LPAR1Q92633 364 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 NXPE3Q969Y0 559 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 ACDQ96AP0 544 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 COA7Q96BR5 231 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 PLD4Q96BZ4 506 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 PAGR1Q9BTK6 254 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 TANGO6Q9C0B7 1094 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 VCPKMTQ9H867 229 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 ABCB6Q9NP58 842 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 RBPJLQ9UBG7 517 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 GDF2Q9UK05 429 aaPredicted RBP8.2□□□□□ -1.1
HMGN1-205ENST00000419378 GABRQQ9UN88 632 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 RLFQ13129 1914 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 CCDC171Q6TFL3 1326 aa8.2□□□□□ -1.1
HMGN1-205ENST00000419378 DOCK3Q8IZD9 2030 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ELOA3CA0A087WX78 387 aaPredicted RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 IGKV6D-41A0A0C4DH26 115 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ELOA3DA6NLF2 546 aaPredicted RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 WDR46O15213 610 aaKnown RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 CNMDO75829 334 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 GSTT1P30711 240 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 GRK4P32298 578 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 GRIA4P48058 902 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 PDE4BQ07343 736 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ALX1Q15699 326 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 SPRED3Q2MJR0 410 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ELOA3BQ3SY89 546 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 CEP135Q66GS9 1140 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ELMSAN1Q6PJG2 1045 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 SLCO4C1Q6ZQN7 724 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ZNF444Q8N0Y2 327 aaPredicted RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 MICALL1Q8N3F8 863 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 C3orf58Q8NDZ4 430 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ELOA3Q8NG57 546 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 POP1Q99575 1024 aaKnown RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 BHLHE41Q9C0J9 482 aaPredicted RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 SMG9Q9H0W8 520 aaKnown RBP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 PORCNQ9H237 461 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 DIAPH3Q9NSV4 1193 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.19□□□□□ -1.1
HMGN1-205ENST00000419378 RABGAP1Q9Y3P9 1069 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 ZMYM6O95789 1325 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 PLXNB2O15031 1838 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 PARP14Q460N5 1801 aa8.19□□□□□ -1.1
HMGN1-205ENST00000419378 LAMA4Q16363 1823 aa8.18□□□□□ -1.1
HMGN1-205ENST00000419378 HIP1O00291 1037 aa8.18□□□□□ -1.1
HMGN1-205ENST00000419378 SMNDC1O75940 238 aaKnown RBP eCLIP8.18□□□□□ -1.14e-7■■■■□ 21.6
HMGN1-205ENST00000419378 FLOT1O75955 427 aa8.18□□□□□ -1.1
HMGN1-205ENST00000419378 FGAP02671 866 aa8.18□□□□□ -1.1
HMGN1-205ENST00000419378 TSPY3P0CV98 308 aa8.18□□□□□ -1.1
HMGN1-205ENST00000419378 TSPY8P0CW00 308 aa8.18□□□□□ -1.1
HMGN1-205ENST00000419378 HSPD1P10809 573 aaKnown RBP8.18□□□□□ -1.1
HMGN1-205ENST00000419378 ELNP15502 786 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms