RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 POTEFA5A3E0 1075 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 C16orf96A6NNT2 1141 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 TK2O00142 265 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 KRT37O76014 449 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 SMARCA1P28370 1054 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 RBBP7Q16576 425 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 ARL13BQ3SXY8 428 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 KRT1P04264 644 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 PAPOLAP51003 745 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 TBC1D1Q86TI0 1168 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 GTSE1Q9NYZ3 720 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 POLR2FP61218 127 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 MXD4Q14582 209 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 BZW1Q7L1Q6 419 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 KPNA7A9QM74 516 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 EPHB1P54762 984 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 COPS2P61201 443 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 JARID2Q92833 1246 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 STXBP3O00186 592 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 CA4P22748 312 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 CYTH1Q15438 398 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 EXOC3L4Q17RC7 722 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 EPM2AIP1Q7L775 607 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 FHDC1Q9C0D6 1143 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 SNX25Q9H3E2 840 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 SLC44A4Q53GD3 710 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 NGLY1Q96IV0 654 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 GCNAQ96QF7 691 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 STK17AQ9UEE5 414 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 SOS1Q07889 1333 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 MBD4O95243 580 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 IGHDP01880 384 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 HOXA7P31268 230 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 POLGP54098 1239 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 TUBGCP2Q9BSJ2 902 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 NIP7Q9Y221 180 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 B4E1Z4 1266 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 TSPY1Q01534 308 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 DR1Q01658 176 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 LAMC2Q13753 1193 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 FSD1LQ9BXM9 530 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 V9GY48 417 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 H7C1D1 291 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 LBRQ14739 615 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 ATAD3BQ5T9A4 648 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 PPP1R13BQ96KQ4 1090 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 EML4Q9HC35 981 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 ADAMTS2O95450 1211 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 STX3Q13277 289 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 PRKG1Q13976 671 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 EPN1Q9Y6I3 576 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 FGD5Q6ZNL6 1462 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 GOLGA8TH3BQL2 631 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 DIAPH2O60879 1101 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 GOLGA8HP0CJ92 632 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 EIF6P56537 245 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 ARHGAP17Q68EM7 881 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 CENPPQ6IPU0 288 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 LRRC49Q8IUZ0 686 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 SENP1Q9P0U3 644 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 ASXL1Q8IXJ9 1541 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 DYNLT1P63172 113 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 NDUFA5Q16718 116 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 PDIK1LQ8N165 341 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 PDCD10Q9BUL8 212 aa14.29□□□□□ -0.12
CCDC88A-204ENST00000413716 DLGAP3O95886 979 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 H2AFZP0C0S5 128 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 TTLL7Q6ZT98 887 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 H2AFVQ71UI9 128 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 DEPDC7Q96QD5 511 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 PIK3R2O00459 728 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 SOX6P35712 828 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CYLC2Q14093 348 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 NUGGCQ68CJ6 796 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CFTRP13569 1480 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CASKIN1Q8WXD9 1431 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 C2orf54Q08AI8 447 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 INPP5AQ14642 412 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 LRRC8EQ6NSJ5 796 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 GANCQ8TET4 914 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 MRPL47Q9HD33 250 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 COPEO14579 308 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 XPOTO43592 962 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 ACSL3O95573 720 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 TTC8Q8TAM2 541 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 RBM17Q96I25 401 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CDH24Q86UP0 819 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CYGBQ8WWM9 190 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 PBXIP1Q96AQ6 731 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 RRAGDQ9NQL2 400 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 NFIBO00712 420 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 FOSL2P15408 326 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CIITAP33076 1130 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 ABCD1P33897 745 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 PRPSAP2O60256 369 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 METTL23Q86XA0 190 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 CNPY4Q8N129 248 aa14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 MYH9P35579 1960 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-204ENST00000413716 GOLGA8IPA6NC78 632 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 KITP10721 976 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms