RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 ATN1P54259 1190 aaPredicted RBP12.54□□□□□ -0.4
SNX13-202ENST00000409604 SCARA5Q6ZMJ2 495 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 C15orf52Q6ZUT6 534 aaKnown RBP12.54□□□□□ -0.4
SNX13-202ENST00000409604 KIF18AQ8NI77 898 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 TUBGCP2Q9BSJ2 902 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 SLC9A2Q9UBY0 812 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 CD58P19256 250 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 PRCPP42785 496 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 STAT5BP51692 787 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 MCTP2Q6DN12 878 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 PPP1R18Q6NYC8 613 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 EHD4Q9H223 541 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 ZFYVE28Q9HCC9 887 aa12.54□□□□□ -0.4
SNX13-202ENST00000409604 LAD1O00515 517 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 CYP2C19P33261 490 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 SEZ6Q53EL9 994 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 ZC2HC1CQ53FD0 456 aaPredicted RBP12.53□□□□□ -0.4
SNX13-202ENST00000409604 ZNF569Q5MCW4 686 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 SYT10Q6XYQ8 523 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 KCNB2Q92953 911 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 GSDMAQ96QA5 445 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 SPATC1LQ9H0A9 340 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 ALDH8A1Q9H2A2 487 aaPredicted RBP12.53□□□□□ -0.4
SNX13-202ENST00000409604 USTQ9Y2C2 406 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 CEP290O15078 2479 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 VWA5AO00534 786 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 CCP110O43303 1012 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 CYLC1P35663 651 aaPredicted RBP12.53□□□□□ -0.4
SNX13-202ENST00000409604 JAG1P78504 1218 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 NOLC1Q14978 699 aaKnown RBP eCLIP12.53□□□□□ -0.4
SNX13-202ENST00000409604 TAF12Q16514 161 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 ARL6IP4Q66PJ3 421 aaKnown RBP12.53□□□□□ -0.4
SNX13-202ENST00000409604 CATSPER4Q7RTX7 472 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 ADPGKQ9BRR6 497 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 PRDM5Q9NQX1 630 aaPredicted RBP12.53□□□□□ -0.4
SNX13-202ENST00000409604 PCDHA10Q9Y5I2 948 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 ICAM1P05362 532 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 TMEM191BP0C7N4 346 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 SSTR3P32745 418 aaPredicted RBP12.53□□□□□ -0.4
SNX13-202ENST00000409604 ARPP19P56211 112 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 LY6KQ17RY6 165 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 OR6J1Q8NGC5 347 aa12.53□□□□□ -0.4
SNX13-202ENST00000409604 MSH4O15457 936 aa12.52□□□□□ -0.4
SNX13-202ENST00000409604 RRP1BQ14684 758 aaKnown RBP12.52□□□□□ -0.4
SNX13-202ENST00000409604 CCDC122Q5T0U0 273 aa12.52□□□□□ -0.4
SNX13-202ENST00000409604 METTL16Q86W50 562 aaKnown RBP12.52□□□□□ -0.4
SNX13-202ENST00000409604 P2RX5Q93086 422 aa12.52□□□□□ -0.4
SNX13-202ENST00000409604 DOT1LQ8TEK3 1739 aa12.52□□□□□ -0.4
SNX13-202ENST00000409604 TRPM3Q9HCF6 1732 aaPredicted RBP12.52□□□□□ -0.4
SNX13-202ENST00000409604 DENND3A2RUS2 1198 aa12.52□□□□□ -0.4
SNX13-202ENST00000409604 UBXN4Q92575 508 aa12.52□□□□□ -0.4
SNX13-202ENST00000409604 WNT7AO00755 349 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 GTF2A2P52657 109 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 YARSP54577 528 aaKnown RBP12.52□□□□□ -0.41
SNX13-202ENST00000409604 KIF5AQ12840 1032 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 SPATA1Q5VX52 437 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 RNF149Q8NC42 400 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 KLRG1Q96E93 195 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 RNF19AQ9NV58 838 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 RIPK3Q9Y572 518 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 NUB1Q9Y5A7 615 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 SYNJ2BP-COX16A0A087WUM0 186 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 UQCRHLA0A096LP55 91 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 RSPH10B2B2RC85 870 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 UQCRHP07919 91 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 RSPH10BP0C881 870 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 TNFAIP3P21580 790 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 COPB2P35606 906 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 KLHL30Q0D2K2 578 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 USP50Q70EL3 339 aaPredicted RBP12.52□□□□□ -0.41
SNX13-202ENST00000409604 FAM186BQ8IYM0 893 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 C7orf31Q8N865 590 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 SYTL5Q8TDW5 730 aaPredicted RBP12.52□□□□□ -0.41
SNX13-202ENST00000409604 FAM20AQ96MK3 541 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 NUDT12Q9BQG2 462 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 TBC1D22BQ9NU19 505 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 COX16Q9P0S2 106 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 PNMA2Q9UL42 364 aa12.52□□□□□ -0.41
SNX13-202ENST00000409604 ZNF215Q9UL58 517 aaPredicted RBP12.52□□□□□ -0.41
SNX13-202ENST00000409604 P4HBP07237 508 aaKnown RBP12.51□□□□□ -0.41
SNX13-202ENST00000409604 RCAN1P53805 252 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 HIRAP54198 1017 aaPredicted RBP12.51□□□□□ -0.41
SNX13-202ENST00000409604 PLCB3Q01970 1234 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 STK4Q13043 487 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 COPS5Q92905 334 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 TRIM49P0CI25 452 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 TRIM49CP0CI26 452 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 CASP14P31944 242 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 YWHABP31946 246 aaKnown RBP12.51□□□□□ -0.41
SNX13-202ENST00000409604 USP11P51784 963 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 RETREG2Q8NC44 543 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 FAM213AQ9BRX8 229 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 GCLMP48507 274 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 NEDD9Q14511 834 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 TRAPPC12Q8WVT3 735 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 RUFY1Q96T51 708 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 KIAA1683Q9H0B3 1180 aa12.51□□□□□ -0.41
SNX13-202ENST00000409604 AFDNP55196 1824 aaKnown RBP12.51□□□□□ -0.41
SNX13-202ENST00000409604 FAM86B1E9PN63 330 aa12.5□□□□□ -0.41
SNX13-202ENST00000409604 HIP1RO75146 1068 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms