RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 PRPF38AQ8NAV1 312 aaKnown RBP16.72■□□□□ 0.27
GPC3-202ENST00000394299 CLEC4DQ8WXI8 215 aa16.72■□□□□ 0.27
GPC3-202ENST00000394299 HSD17B14Q9BPX1 270 aa16.72■□□□□ 0.27
GPC3-202ENST00000394299 GTPBP4Q9BZE4 634 aaKnown RBP16.72■□□□□ 0.27
GPC3-202ENST00000394299 FAM207AQ9NSI2 230 aaPredicted RBP16.72■□□□□ 0.27
GPC3-202ENST00000394299 TRIM10Q9UDY6 481 aa16.72■□□□□ 0.27
GPC3-202ENST00000394299 ICAM1P05362 532 aa16.71■□□□□ 0.27
GPC3-202ENST00000394299 CASQ1P31415 396 aa16.71■□□□□ 0.27
GPC3-202ENST00000394299 TNFAIP1Q13829 316 aa16.71■□□□□ 0.27
GPC3-202ENST00000394299 ELF2Q15723 593 aa16.71■□□□□ 0.27
GPC3-202ENST00000394299 DNAJC7Q99615 494 aa16.71■□□□□ 0.27
GPC3-202ENST00000394299 IKZF4Q9H2S9 585 aa16.71■□□□□ 0.27
GPC3-202ENST00000394299 FLOT1O75955 427 aa16.71■□□□□ 0.26
GPC3-202ENST00000394299 MYBP10242 640 aa16.71■□□□□ 0.26
GPC3-202ENST00000394299 ITGB5P18084 799 aa16.71■□□□□ 0.26
GPC3-202ENST00000394299 ERCC6LQ2NKX8 1250 aa16.71■□□□□ 0.26
GPC3-202ENST00000394299 SMCR8Q8TEV9 937 aaPredicted RBP16.71■□□□□ 0.26
GPC3-202ENST00000394299 ZNF577Q9BSK1 485 aa16.71■□□□□ 0.26
GPC3-202ENST00000394299 KCTD10Q9H3F6 313 aa16.71■□□□□ 0.26
GPC3-202ENST00000394299 EPN1Q9Y6I3 576 aaPredicted RBP16.71■□□□□ 0.26
GPC3-202ENST00000394299 FRMD3A2A2Y4 597 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 CTNND1O60716 968 aaKnown RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 PRPF6O94906 941 aaKnown RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 RPS12P25398 132 aaKnown RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 HOXD13P35453 343 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 APBA1Q02410 837 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 KCNA1Q09470 495 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 ANGEL2Q5VTE6 544 aaKnown RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 TRPM4Q8TD43 1214 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 SLC5A5Q92911 643 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 ERGIC2Q96RQ1 377 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 TSG101Q99816 390 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 WDR11Q9BZH6 1224 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 UNC45AQ9H3U1 944 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 MMRN2Q9H8L6 949 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 GOLGA6L9A6NEM1 432 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 RRP9O43818 475 aaKnown RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 GAS7O60861 476 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 TUBB4AP04350 444 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 VCAM1P19320 739 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 FKBP3Q00688 224 aaKnown RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 TRAF1Q13077 416 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 MAN2A1Q16706 1144 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 FKBP15Q5T1M5 1219 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 ERO1AQ96HE7 468 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 POLR3CQ9BUI4 534 aaPredicted RBP16.7■□□□□ 0.26
GPC3-202ENST00000394299 CARD6Q9BX69 1037 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 KIAA1683Q9H0B3 1180 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 SIK3Q9Y2K2 1263 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 RABGAP1Q9Y3P9 1069 aa16.7■□□□□ 0.26
GPC3-202ENST00000394299 WDR46O15213 610 aaKnown RBP16.69■□□□□ 0.26
GPC3-202ENST00000394299 NDUFA10O95299 355 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 PLEKP08567 350 aaPredicted RBP16.69■□□□□ 0.26
GPC3-202ENST00000394299 ARHGAP25P42331 645 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 PRKG1Q13976 671 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 ZNF569Q5MCW4 686 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 RPAP3Q9H6T3 665 aaPredicted RBP16.69■□□□□ 0.26
GPC3-202ENST00000394299 TFRCP02786 760 aaKnown RBP16.69■□□□□ 0.26
GPC3-202ENST00000394299 HSD17B4P51659 736 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 CCDC40Q4G0X9 1142 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 RINT1Q6NUQ1 792 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 PDCL3Q9H2J4 239 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 RIPK3Q9Y572 518 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 COL4A3BPQ9Y5P4 624 aa16.69■□□□□ 0.26
GPC3-202ENST00000394299 PITPNM2Q9BZ72 1349 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 IPO5O00410 1097 aaKnown RBP16.68■□□□□ 0.26
GPC3-202ENST00000394299 EYA4O95677 639 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 KCNMA1Q12791 1236 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 ADAM9Q13443 819 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 TRMT1LQ7Z2T5 733 aaKnown RBP16.68■□□□□ 0.26
GPC3-202ENST00000394299 KSR1Q8IVT5 923 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 PDCL2Q8N4E4 241 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 BANK1Q8NDB2 785 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 TAAR1Q96RJ0 339 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 MXRA8Q9BRK3 442 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 CRACR2AQ9BSW2 395 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 EPC1Q9H2F5 836 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 SLC38A10Q9HBR0 1119 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 CD2APQ9Y5K6 639 aa16.68■□□□□ 0.26
GPC3-202ENST00000394299 BRCA1P38398 1863 aaKnown RBP16.68■□□□□ 0.26
GPC3-202ENST00000394299 PPP2R5CQ13362 524 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 ARHGAP29Q52LW3 1261 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 WRNIP1Q96S55 665 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 FGFR1OPO95684 399 aaKnown RBP16.67■□□□□ 0.26
GPC3-202ENST00000394299 EIF2AK2P19525 551 aaKnown RBP16.67■□□□□ 0.26
GPC3-202ENST00000394299 HERVK_113P62684 666 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 MRPS9P82933 396 aaKnown RBP16.67■□□□□ 0.26
GPC3-202ENST00000394299 ZBED6P86452 979 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 CYP27A1Q02318 531 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 TSR1Q2NL82 804 aaKnown RBP16.67■□□□□ 0.26
GPC3-202ENST00000394299 SLC35F6Q8N357 371 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 LPAR1Q92633 364 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 ATG4CQ96DT6 458 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 SH2D3AQ9BRG2 576 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 NUP58Q9BVL2 599 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 NHEJ1Q9H9Q4 299 aaPredicted RBP16.67■□□□□ 0.26
GPC3-202ENST00000394299 KCNH7Q9NS40 1196 aa16.67■□□□□ 0.26
GPC3-202ENST00000394299 RCCD1A6NED2 376 aa16.66■□□□□ 0.26
GPC3-202ENST00000394299 NMT1P30419 496 aaKnown RBP16.66■□□□□ 0.26
GPC3-202ENST00000394299 EPS15P42566 896 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms