RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ZHX2Q9Y6X8 837 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 CYP3A7-CYP3A51PA0A087WV96 503 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 GOLGA6L9A6NEM1 432 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 ENC1O14682 589 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 FGFR1OPO95684 399 aaKnown RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 CYP3A7P24462 503 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 RPA1P27694 616 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 FKBP3Q00688 224 aaKnown RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 DCAF17Q5H9S7 520 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 MIIPQ5JXC2 388 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 KRT26Q7Z3Y9 468 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 PRPF38AQ8NAV1 312 aaKnown RBP12.33□□□□□ -0.44
TCOF1-203ENST00000394269 FAM20AQ96MK3 541 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 TCEAL9Q9UHQ7 104 aa12.33□□□□□ -0.44
TCOF1-203ENST00000394269 MACROD2A1Z1Q3 448 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 NDUFA10O95299 355 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 MYBP10242 640 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 SPIRE1Q08AE8 756 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 SLC35F6Q8N357 371 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 SCFD1Q8WVM8 642 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 ERO1AQ96HE7 468 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 DRC1Q96MC2 740 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 WDR11Q9BZH6 1224 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 PCDHB13Q9Y5F0 798 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 ITIH6Q6UXX5 1313 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 IPO5O00410 1097 aaKnown RBP12.32□□□□□ -0.44
TCOF1-203ENST00000394269 NR2F2P24468 414 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 TRIM14Q14142 442 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 Q4G0T1 1027 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 CCDC122Q5T0U0 273 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 RDH13Q8NBN7 331 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 CCDC42Q96M95 316 aa12.32□□□□□ -0.44
TCOF1-203ENST00000394269 TESPA1A2RU30 521 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 FAM13AO94988 1023 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 HMGCS2P54868 508 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 SLC12A3P55017 1021 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 GIT2Q14161 759 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 TDRD12Q587J7 1177 aaKnown RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 MUM1L1Q5H9M0 696 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 FAM160B2Q86V87 743 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 ANKRD13CQ8N6S4 541 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 IL31RAQ8NI17 732 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 CCDC51Q96ER9 411 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 RPAP3Q9H6T3 665 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 KCND1Q9NSA2 647 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 CAPN11Q9UMQ6 739 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.31□□□□□ -0.448e-6■■□□□ 13.6
TCOF1-203ENST00000394269 NMT1P30419 496 aaKnown RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 PPP1R2P41236 205 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 NAP1L1P55209 391 aaKnown RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 PSMD2Q13200 908 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 ZC2HC1CQ53FD0 456 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 OTOP1Q7RTM1 612 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 WNK4Q96J92 1243 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 CCDC43Q96MW1 224 aaKnown RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 FHDC1Q9C0D6 1143 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 RANBP17Q9H2T7 1088 aaKnown RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 PICK1Q9NRD5 415 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 COL20A1Q9P218 1284 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 COL4A3BPQ9Y5P4 624 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 DUSP10Q9Y6W6 482 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 AKR1B10O60218 316 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 SLITRK3O94933 977 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 LRRC63Q05C16 580 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 TRAF1Q13077 416 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 MAN2A1Q16706 1144 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 WDR59Q6PJI9 974 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 CRYGNQ8WXF5 182 aa12.31□□□□□ -0.44
TCOF1-203ENST00000394269 NHEJ1Q9H9Q4 299 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 RNF216Q9NWF9 866 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-203ENST00000394269 RASSF10A6NK89 507 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 PHF20L1A8MW92 1017 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 PEX10O60683 326 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 NEK11Q8NG66 645 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 EHMT1Q9H9B1 1298 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 PHLPP2Q6ZVD8 1323 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 IGLV3-22A0A075B6J6 115 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 TMEM150BA6NC51 233 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 CETN3O15182 167 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 VCAM1P19320 739 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 DNA2P51530 1060 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 ATG4CQ96DT6 458 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 TEPSINQ96N21 525 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 TAAR1Q96RJ0 339 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 VAV3Q9UKW4 847 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 MYH7BA7E2Y1 1941 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 A0A1W2PQC6 194 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 TBC1D12O60347 775 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 ITGB5P18084 799 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 PRELPP51888 382 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 POLR2FP61218 127 aaKnown RBP12.3□□□□□ -0.44
TCOF1-203ENST00000394269 RPS6P62753 249 aaKnown RBP12.3□□□□□ -0.44
TCOF1-203ENST00000394269 PPP2R3AQ06190 1150 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 UTP14CQ5TAP6 766 aaKnown RBP12.3□□□□□ -0.44
TCOF1-203ENST00000394269 FKBP1CQ5VVH2 108 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 LRRC55Q6ZSA7 311 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 SYT2Q8N9I0 419 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-203ENST00000394269 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.3□□□□□ -0.44
TCOF1-203ENST00000394269 UNC45AQ9H3U1 944 aa12.3□□□□□ -0.44
TCOF1-203ENST00000394269 KCNH7Q9NS40 1196 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms