RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EPN3Q9H201 632 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 ABHD10Q9NUJ1 306 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 USP17L12C9JPN9 530 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 USP17L21D6R901 530 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 APOA1P02647 267 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 CADPS2Q86UW7 1296 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 ZNF473Q8WTR7 871 aaKnown RBP12.75□□□□□ -0.37
SYNPO-202ENST00000394243 RMDN2Q96LZ7 410 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 ANO3Q9BYT9 981 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 CYP4F11Q9HBI6 524 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 HDAC6Q9UBN7 1215 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 KCNG1Q9UIX4 513 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 CFAP69A5D8W1 941 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CTIFO43310 598 aaKnown RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CYP4A11Q02928 519 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 TSTA3Q13630 321 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CEP55Q53EZ4 464 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 DTX3LQ8TDB6 740 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 OSBPL9Q96SU4 736 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 RHBDL2Q9NX52 303 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CLIC2O15247 247 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 DDIT3P35638 169 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 RESTQ13127 1097 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 XKR9Q5GH70 373 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 HESX1Q9UBX0 185 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ADAMTS1Q9UHI8 967 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 INPP5FQ9Y2H2 1132 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 E9PMD0 336 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 OATP04181 439 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 GOLGA8HP0CJ92 632 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 KCNA3P22001 575 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 USP14P54578 494 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CCDC85BQ15834 202 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 GALNT17Q6IS24 598 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 KCTD6Q8NC69 237 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CCNYQ8ND76 341 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 COG1Q8WTW3 980 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 EYA3Q99504 573 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ABCC1P33527 1531 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ZSCAN20P17040 1043 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ERFP50548 548 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ARFIP2P53365 341 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 KIF23Q02241 960 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ENAHQ8N8S7 591 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 SUPT20HQ8NEM7 779 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 SDR42E1Q8WUS8 393 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CALN1Q9BXU9 219 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 UBE2TQ9NPD8 197 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 BRAFP15056 766 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 KPNA2P52292 529 aaKnown RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ZNF790Q6PG37 636 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 PDIK1LQ8N165 341 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 PSMD7P51665 324 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 CCDC15Q0P6D6 951 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 NLRX1Q86UT6 975 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 MCF2L2Q86YR7 1114 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 PRPF38AQ8NAV1 312 aaKnown RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 PNMA1Q8ND90 353 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 PDLIM2Q96JY6 352 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 LBHD1Q9BQE6 289 aaPredicted RBP12.74□□□□□ -0.37
SYNPO-202ENST00000394243 ABCC12Q96J65 1359 aa12.74□□□□□ -0.37
SYNPO-202ENST00000394243 NPATQ14207 1427 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 KLRF2D3W0D1 207 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 KRT8P05787 483 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 SRGAP2BP0DMP2 458 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 ODR4Q5SWX8 454 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 RNF207Q6ZRF8 634 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 PAGE5Q96GU1 130 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 DCAF5Q96JK2 942 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 CCDC195A0A1B0GUA6 201 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 GOLGA8SH3BPF8 625 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 LARGE1O95461 756 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 DMP1Q13316 513 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 NSMFQ6X4W1 530 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 ZNF280CQ8ND82 737 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 NDST4Q9H3R1 872 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 ADA2Q9NZK5 511 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 CACNB1Q02641 598 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 RARS2Q5T160 578 aaKnown RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 NFRKBQ6P4R8 1299 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 USP44Q9H0E7 712 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 FMNL1O95466 1100 aaPredicted RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 SNRNP27Q8WVK2 155 aaKnown RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 MLXIPQ9HAP2 919 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 WBP4O75554 376 aaKnown RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 PDE6AP16499 860 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 HNRNPH1P31943 449 aaKnown RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 IL13P35225 146 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 THOC5Q13769 683 aaKnown RBP12.73□□□□□ -0.37
SYNPO-202ENST00000394243 TBC1D23Q9NUY8 699 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 MID2Q9UJV3 735 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 L3MBTL1Q9Y468 752 aa12.73□□□□□ -0.37
SYNPO-202ENST00000394243 CDC25AP30304 524 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 ALKBH5Q6P6C2 394 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 PAWRQ96IZ0 340 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 UFL1O94874 794 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 VSNL1P62760 191 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 HABP4Q5JVS0 413 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 CCT8L2Q96SF2 557 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 TAF1DQ9H5J8 278 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 1089.5 ms