RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 BUB1O43683 1085 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 SMARCA1P28370 1054 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 PPP2R5AQ15172 486 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 DCAF8Q5TAQ9 597 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 APOBEC3HQ6NTF7 200 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 MAATS1Q7Z4T9 603 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 P2RX5Q93086 422 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 PNMA5Q96PV4 448 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 PURBQ96QR8 312 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 VEZTQ9HBM0 779 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 MYMKA6NI61 221 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 PAFAH1B1P43034 410 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 ZNF543Q08ER8 600 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 KDM7AQ6ZMT4 941 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 KCNK18Q7Z418 384 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 C7orf25Q9BPX7 421 aa19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 A1CFQ9NQ94 594 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-202ENST00000389805 A0A1W2PQC6 194 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 SNHG28P0DPA3 235 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 DNM2P50570 870 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 SF3A3Q12874 501 aaKnown RBP eCLIP19.45■□□□□ 0.76e-7■■□□□ 14.3
SQSTM1-202ENST00000389805 PREPLQ4J6C6 727 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 ASPRV1Q53RT3 343 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 MSL1Q68DK7 614 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 KRT27Q7Z3Y8 459 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 COL23A1Q86Y22 540 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 C2CD5Q86YS7 1000 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 MIEF2Q96C03 454 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 CALML4Q96GE6 196 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 THAP9Q9H5L6 903 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 USO1O60763 962 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 MYL1P05976 194 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 PAX7P23759 505 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 SMTNP53814 917 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 KIAA0825Q8IV33 1275 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 GLIS3Q8NEA6 775 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 SALL4Q9UJQ4 1053 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 PCDHA13Q9Y5I0 950 aa19.45■□□□□ 0.7
SQSTM1-202ENST00000389805 ESYT2A0FGR8 921 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 RASSF9O75901 435 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 HEXIM1O94992 359 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 EEF1GP26641 437 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 ZBED6P86452 979 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 ECM1Q16610 540 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 IQCKQ8N0W5 287 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 DHTKD1Q96HY7 919 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 TTYH3Q9C0H2 523 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 SEMA6BQ9H3T3 888 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 SLC24A3Q9HC58 644 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 CCNE1P24864 410 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 MTIF2P46199 727 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 CCDC170Q8IYT3 715 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 CAVIN3Q969G5 261 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 CNOT6LQ96LI5 555 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 CUEDC2Q9H467 287 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 SH2D4AQ9H788 454 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 HAUS2Q9NVX0 235 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 DDX20Q9UHI6 824 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 HYOU1Q9Y4L1 999 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 MDH1P40925 334 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 CCDC121Q6ZUS5 278 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 SV2BQ7L1I2 683 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 SPATS2Q86XZ4 545 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 DNAJC18Q9H819 358 aa19.44■□□□□ 0.7
SQSTM1-202ENST00000389805 GOLGA6L7A0A1B0GV03 622 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 RPSAP08865 295 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 TMC4Q7Z404 712 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 PIK3R5Q8WYR1 880 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 ZNF622Q969S3 477 aaKnown RBP eCLIP19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 FAM207AQ9NSI2 230 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 PNMA6FA0A0J9YX94 578 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 AKR1B10O60218 316 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 NEBLO76041 1014 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 LRRC41Q15345 812 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 ZNF662Q6ZS27 426 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 OR2W6PQ8NHA6 318 aa19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 BCCIPQ9P287 314 aaKnown RBP eCLIP19.43■□□□□ 0.7
SQSTM1-202ENST00000389805 ATXN2Q99700 1313 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L15C9J2P7 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L13C9JLJ4 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L11C9JVI0 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L18D6R9N7 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L22D6RA61 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L17D6RBQ6 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L19D6RCP7 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L20D6RJB6 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 OPLAHO14841 1288 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 EIF4A3P38919 411 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 SNAP25P60880 206 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L24Q0WX57 530 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 USP17L6PQ6QN14 398 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 SNX29Q8TEQ0 813 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 TEKT1Q969V4 418 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 ARHGAP20Q9P2F6 1191 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 ADAMTSL1Q8N6G6 1762 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 CCDC189A1A4V9 331 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 A6NNZ2 444 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 EPHB6O15197 1021 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 C21orf2O43822 256 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 TUBB8Q3ZCM7 444 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms