RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ARID3AQ99856 593 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 SLF1Q9BQI6 1058 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 HAUS4Q9H6D7 363 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 TRPM7Q96QT4 1865 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 PLA2G4BP0C869 781 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 ARHGAP25P42331 645 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 HTRA3P83110 453 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 CLMNQ96JQ2 1002 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 CREBZFQ9NS37 354 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 KIAA1024Q9UPX6 916 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 TLL2Q9Y6L7 1015 aa23.88■■□□□ 1.41
TRIM54-202ENST00000380075 CYP3A4P08684 503 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 WDR59Q6PJI9 974 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 LRRC55Q6ZSA7 311 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 PCMTD1Q96MG8 357 aaPredicted RBP23.87■■□□□ 1.41
TRIM54-202ENST00000380075 IRX2Q9BZI1 471 aaPredicted RBP23.87■■□□□ 1.41
TRIM54-202ENST00000380075 NDST4Q9H3R1 872 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 GOPCQ9HD26 462 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 CDC23Q9UJX2 597 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 TMX2Q9Y320 296 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 PAPPA2Q9BXP8 1791 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 STAT2P52630 851 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 JAG1P78504 1218 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 VGLL4Q14135 290 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 ANKRD13AQ8IZ07 590 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 GPR161Q8N6U8 529 aaKnown RBP23.87■■□□□ 1.41
TRIM54-202ENST00000380075 CEP112Q8N8E3 955 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 PRR12Q9ULL5 1215 aa23.87■■□□□ 1.41
TRIM54-202ENST00000380075 A0A1W2PRG0 241 aa23.86■■□□□ 1.41
TRIM54-202ENST00000380075 RASSF10A6NK89 507 aa23.86■■□□□ 1.41
TRIM54-202ENST00000380075 FKBP3Q00688 224 aaKnown RBP23.86■■□□□ 1.41
TRIM54-202ENST00000380075 USH1GQ495M9 461 aa23.86■■□□□ 1.41
TRIM54-202ENST00000380075 ZCWPW2Q504Y3 356 aa23.86■■□□□ 1.41
TRIM54-202ENST00000380075 RSRC2Q7L4I2 434 aaKnown RBP23.86■■□□□ 1.41
TRIM54-202ENST00000380075 CEP63Q96MT8 703 aa23.86■■□□□ 1.41
TRIM54-202ENST00000380075 NAPGQ99747 312 aaPredicted RBP23.86■■□□□ 1.41
TRIM54-202ENST00000380075 POTEB3A0JP26 581 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 FRMD3A2A2Y4 597 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 GNA14O95837 355 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 HNRNPH3P31942 346 aaKnown RBP23.85■■□□□ 1.41
TRIM54-202ENST00000380075 SPIRE1Q08AE8 756 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 PRR16Q569H4 304 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 POTEBQ6S5H4 581 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 GPBP1Q86WP2 473 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 GOLGA1Q92805 767 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 GJA10Q969M2 543 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 EDEM3Q9BZQ6 932 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 E9PMD0 336 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 CTNND1O60716 968 aaKnown RBP23.85■■□□□ 1.41
TRIM54-202ENST00000380075 IPO7O95373 1038 aaKnown RBP23.85■■□□□ 1.41
TRIM54-202ENST00000380075 CYP11B2P19099 503 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 RPA1P27694 616 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 CAP2P40123 477 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 SLC35F6Q8N357 371 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 EHBP1Q8NDI1 1231 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 RABGGTAQ92696 567 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 LENG9Q96B70 501 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 AGPAT5Q9NUQ2 364 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 SIK3Q9Y2K2 1263 aa23.85■■□□□ 1.41
TRIM54-202ENST00000380075 A0A0U1RQJ8 604 aa23.84■■□□□ 1.41
TRIM54-202ENST00000380075 EIF3CLB5ME19 914 aaKnown RBP23.84■■□□□ 1.41
TRIM54-202ENST00000380075 PLA2G6O60733 806 aa23.84■■□□□ 1.41
TRIM54-202ENST00000380075 SSBP05455 408 aaKnown RBP eCLIP23.84■■□□□ 1.41
TRIM54-202ENST00000380075 ATRIPQ8WXE1 791 aa23.84■■□□□ 1.41
TRIM54-202ENST00000380075 EEF2KMTQ96G04 330 aa23.84■■□□□ 1.41
TRIM54-202ENST00000380075 P2RX7Q99572 595 aaKnown RBP23.84■■□□□ 1.41
TRIM54-202ENST00000380075 EIF3CQ99613 913 aaKnown RBP23.84■■□□□ 1.41
TRIM54-202ENST00000380075 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.84■■□□□ 1.41
TRIM54-202ENST00000380075 REXO2Q9Y3B8 237 aaKnown RBP23.84■■□□□ 1.41
TRIM54-202ENST00000380075 CSADQ9Y600 493 aa23.84■■□□□ 1.41
TRIM54-202ENST00000380075 MED24O75448 989 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 HSPA6P17066 643 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 SLC12A3P55017 1021 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 PPP4R3CPQ6ZMV5 832 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 SRGAP1Q7Z6B7 1085 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 SH2D4AQ9H788 454 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 ELP3Q9H9T3 547 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 PCDHA2Q9Y5H9 948 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 SNCAIPQ9Y6H5 919 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 CHURC1Q8WUH1 139 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 ZBTB21Q9ULJ3 1066 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 DNM3Q9UQ16 869 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 COL4A3BPQ9Y5P4 624 aa23.83■■□□□ 1.41
TRIM54-202ENST00000380075 OPLAHO14841 1288 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 SNAP25P60880 206 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 WHAMMP3Q1A5X7 153 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 SCYL3Q8IZE3 742 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 SLC10A4Q96EP9 437 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 NHEJ1Q9H9Q4 299 aaPredicted RBP23.82■■□□□ 1.4
TRIM54-202ENST00000380075 PLAGL2Q9UPG8 496 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 FAM86B1E9PN63 330 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 KRT86O43790 486 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 FAM86B2P0C5J1 330 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 KLK7P49862 253 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 CLCN6P51797 869 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 MARSP56192 900 aaKnown RBP23.82■■□□□ 1.4
TRIM54-202ENST00000380075 CBX1P83916 185 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 HERC4Q5GLZ8 1057 aaPredicted RBP23.82■■□□□ 1.4
TRIM54-202ENST00000380075 NOL9Q5SY16 702 aaKnown RBP23.82■■□□□ 1.4
TRIM54-202ENST00000380075 CATSPER3Q86XQ3 398 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms