RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 LRRC47Q8N1G4 583 aaKnown RBP17.99■□□□□ 0.47
SDC4-201ENST00000372733 TAF4BQ92750 862 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 TAF1DQ9H5J8 278 aaPredicted RBP17.99■□□□□ 0.47
SDC4-201ENST00000372733 YY1AP1Q9H869 796 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 HMGB1P1B2RPK0 211 aaPredicted RBP17.99■□□□□ 0.47
SDC4-201ENST00000372733 H0YHG0 523 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 ACTN1P12814 892 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 MNAT1P51948 309 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 TEX11Q8IYF3 940 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 CCT8L2Q96SF2 557 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 LRRC27Q9C0I9 530 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 SBF2Q86WG5 1849 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 CLSTN1O94985 981 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 RPS6KA1Q15418 735 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 EMC10Q5UCC4 262 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 FOXR2Q6PJQ5 311 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 HAS1Q92839 578 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 CEP63Q96MT8 703 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 SETDB2Q96T68 719 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 TMEM59LQ9UK28 342 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 E9PMD0 336 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 TM4SF1P30408 202 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 HSD17B3P37058 310 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 EPS15P42566 896 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 EIF6P56537 245 aaKnown RBP17.98■□□□□ 0.47
SDC4-201ENST00000372733 RNF187Q5TA31 235 aaPredicted RBP17.98■□□□□ 0.47
SDC4-201ENST00000372733 NYXQ9GZU5 481 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 TMBIM4Q9HC24 238 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 GPCPD1Q9NPB8 672 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 DDX25Q9UHL0 483 aaKnown RBP17.98■□□□□ 0.47
SDC4-201ENST00000372733 SPATA31A1Q5TZJ5 1347 aa17.98■□□□□ 0.47
SDC4-201ENST00000372733 E7EVH7 732 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 CEP104O60308 925 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 FSBPO95073 299 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 KIF4AO95239 1232 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 PTK2Q05397 1052 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 UAP1Q16222 522 aaPredicted RBP17.97■□□□□ 0.47
SDC4-201ENST00000372733 AP1M1Q9BXS5 423 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 NEUROG2Q9H2A3 272 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 AIPL1Q9NZN9 384 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 SMARCA1P28370 1054 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 SWT1Q5T5J6 900 aaKnown RBP17.97■□□□□ 0.47
SDC4-201ENST00000372733 SPATS2Q86XZ4 545 aaKnown RBP17.97■□□□□ 0.47
SDC4-201ENST00000372733 SCFD1Q8WVM8 642 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 CEP89Q96ST8 783 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 PAGR1Q9BTK6 254 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 ISCUQ9H1K1 167 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 PLCB1Q9NQ66 1216 aa17.97■□□□□ 0.47
SDC4-201ENST00000372733 MARCH6O60337 910 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 NFIXQ14938 502 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 MICALCLQ6ZW33 695 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 ZNF571Q7Z3V5 609 aaPredicted RBP17.96■□□□□ 0.47
SDC4-201ENST00000372733 CDCA7Q9BWT1 371 aaPredicted RBP17.96■□□□□ 0.47
SDC4-201ENST00000372733 PPANQ9NQ55 473 aaKnown RBP17.96■□□□□ 0.47
SDC4-201ENST00000372733 PCDHA2Q9Y5H9 948 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 POTEB3A0JP26 581 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 GOLGA6L10A6NI86 522 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 POTECB2RU33 542 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 LDHCP07864 332 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 USP11P51784 963 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 HERC4Q5GLZ8 1057 aaPredicted RBP17.96■□□□□ 0.47
SDC4-201ENST00000372733 POTEBQ6S5H4 581 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 GPBP1Q86WP2 473 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 DDX47Q9H0S4 455 aaKnown RBP17.96■□□□□ 0.47
SDC4-201ENST00000372733 KCTD10Q9H3F6 313 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 ZHX3Q9H4I2 956 aa17.96■□□□□ 0.47
SDC4-201ENST00000372733 CDK5RAP2Q96SN8 1893 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 PPP1R11O60927 126 aaPredicted RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 GNA14O95837 355 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 MARSP56192 900 aaKnown RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 KCNH2Q12809 1159 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 IFT88Q13099 833 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 C1orf131Q8NDD1 294 aaKnown RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 KIAA1024Q9UPX6 916 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 MYH4Q9Y623 1939 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 H0YGN5 161 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 GCOM1H8Y6P7 765 aaPredicted RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 hCG_1984214I3L0E3 225 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 FAM107AO95990 144 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 MYZAPP0CAP1 466 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 SLC9A1P19634 815 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 ZNF844Q08AG5 666 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 ADAM9Q13443 819 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 SEPT2Q15019 361 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 CCDC65Q8IXS2 484 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 ZNF713Q8N859 430 aaPredicted RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 CABS1Q96KC9 395 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 BMP2KQ9NSY1 1161 aaPredicted RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 NOC2LQ9Y3T9 749 aaKnown RBP17.95■□□□□ 0.46
SDC4-201ENST00000372733 NFS1Q9Y697 457 aa17.95■□□□□ 0.46
SDC4-201ENST00000372733 PLA2G4BP0C869 781 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 USP8P40818 1118 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 LRRC57Q8N9N7 239 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 SCFD2Q8WU76 684 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 NHSQ6T4R5 1651 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 HOXA7P31268 230 aaPredicted RBP17.94■□□□□ 0.46
SDC4-201ENST00000372733 CTNNA1P35221 906 aaKnown RBP17.94■□□□□ 0.46
SDC4-201ENST00000372733 FLT3P36888 993 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 PPP4R3AQ6IN85 833 aa17.94■□□□□ 0.46
SDC4-201ENST00000372733 LRIG3Q6UXM1 1119 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms