RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 TACC3Q9Y6A5 838 aa12.82□□□□□ -0.36
USF1-201ENST00000368019 A0A087X0B3 334 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 A6NNZ2 444 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L15C9J2P7 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L13C9JLJ4 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L11C9JVI0 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L18D6R9N7 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L22D6RA61 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L17D6RBQ6 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L19D6RCP7 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L20D6RJB6 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 SHMT1P34896 483 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 RGS2P41220 211 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 GABPAQ06546 454 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 USP17L24Q0WX57 530 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 TUBB8Q3ZCM7 444 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 TCP11X2Q5H9J9 407 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 PDXDC2PQ6P474 469 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 ZNF572Q7Z3I7 529 aaPredicted RBP12.81□□□□□ -0.36
USF1-201ENST00000368019 OR8K1Q8NGG5 319 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 ACER1Q8TDN7 264 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 LRCH3Q96II8 777 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 DNAJC7Q99615 494 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 APBA2Q99767 749 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 PAGR1Q9BTK6 254 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 THAP9Q9H5L6 903 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 ARMT1Q9H993 441 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 VPS18Q9P253 973 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 PUF60Q9UHX1 559 aaKnown RBP12.81□□□□□ -0.36
USF1-201ENST00000368019 ZMYND8Q9ULU4 1186 aaPredicted RBP12.81□□□□□ -0.36
USF1-201ENST00000368019 RRP15Q9Y3B9 282 aaKnown RBP12.81□□□□□ -0.36
USF1-201ENST00000368019 EPN1Q9Y6I3 576 aaPredicted RBP12.81□□□□□ -0.36
USF1-201ENST00000368019 SLC4A4Q9Y6R1 1079 aa12.81□□□□□ -0.36
USF1-201ENST00000368019 ZNFX1Q9P2E3 1918 aaKnown RBP12.81□□□□□ -0.36
USF1-201ENST00000368019 LGALS16A8MUM7 142 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 KCNJ18B7U540 433 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 NDUFA10O95299 355 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CPP00450 1065 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 IGHA2P01877 340 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 VCAM1P19320 739 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CCND3P30281 292 aaPredicted RBP12.8□□□□□ -0.36
USF1-201ENST00000368019 LONP1P36776 959 aaKnown RBP12.8□□□□□ -0.36
USF1-201ENST00000368019 MAGEA9P43362 315 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 VSNL1P62760 191 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 MAP2K5Q13163 448 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 KCNJ12Q14500 433 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 MEA1Q16626 185 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 ABCB5Q2M3G0 1257 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CERKLQ49MI3 558 aaPredicted RBP12.8□□□□□ -0.36
USF1-201ENST00000368019 FIGNQ5HY92 759 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 USP49Q70CQ1 688 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CATIPQ7Z7H3 387 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 GRAMD1CQ8IYS0 662 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CCDC170Q8IYT3 715 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 OXER1Q8TDS5 423 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 IRX2Q9BZI1 471 aaPredicted RBP12.8□□□□□ -0.36
USF1-201ENST00000368019 CUEDC2Q9H467 287 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 SH3GLB2Q9NR46 395 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CAPN11Q9UMQ6 739 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 CTNND2Q9UQB3 1225 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 PARP14Q460N5 1801 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 TNKSO95271 1327 aa12.8□□□□□ -0.36
USF1-201ENST00000368019 BAZ2AQ9UIF9 1905 aaKnown RBP12.8□□□□□ -0.36
USF1-201ENST00000368019 KRT86O43790 486 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 PPFIA4O75335 1185 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 PRPF6O94906 941 aaKnown RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 HOXC6P09630 235 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 KRT9P35527 623 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 CYLC1P35663 651 aaPredicted RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 AFMP43652 599 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 DNM2P50570 870 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 CCNA1P78396 465 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 MCM6Q14566 821 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 ZYXQ15942 572 aaKnown RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 TSR1Q2NL82 804 aaKnown RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 RRAGBQ5VZM2 374 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 GPR153Q6NV75 609 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 TMTC3Q6ZXV5 915 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 LCORLQ8N3X6 602 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 ACRBPQ8NEB7 543 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 PURBQ96QR8 312 aaKnown RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 NUP88Q99567 741 aaPredicted RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 TSGA10Q9BZW7 698 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 ZNHIT6Q9NWK9 470 aaKnown RBP12.79□□□□□ -0.36
USF1-201ENST00000368019 FLRT1Q9NZU1 646 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 BTBD7Q9P203 1132 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 CNTNAP5Q8WYK1 1306 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 A0A0G2JMZ2 1700 aa12.79□□□□□ -0.36
USF1-201ENST00000368019 ZNF236Q9UL36 1845 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 MAGEB6P1A0A0J9YX57 407 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 SLC15A5A6NIM6 579 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 SPDYE16A6NNV3 312 aaPredicted RBP12.78□□□□□ -0.36
USF1-201ENST00000368019 ORC4O43929 436 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 PRLRP16471 622 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 SYN1P17600 705 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 CALML3P27482 149 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 MAGEA10P43363 369 aaPredicted RBP12.78□□□□□ -0.36
USF1-201ENST00000368019 EVX2Q03828 476 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 STIM1Q13586 685 aa12.78□□□□□ -0.36
USF1-201ENST00000368019 NPY5RQ15761 445 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms