RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 BARX2Q9UMQ3 279 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P39-201ENST00000366304 EMSYQ7Z589 1322 aa10.02□□□□□ -0.81
HMGB1P39-201ENST00000366304 NLRC5Q86WI3 1866 aa10.02□□□□□ -0.81
HMGB1P39-201ENST00000366304 PATL2C9JE40 543 aaKnown RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 RNF113AO15541 343 aaKnown RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 SMARCA5O60264 1052 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 MMP1P03956 469 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 APPP05067 770 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 CTSHP09668 335 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 ID4P47928 161 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 NDUFV1P49821 464 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 CTDSPL2Q05D32 466 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 COASYQ13057 564 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 ZSCAN25Q6NSZ9 544 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 FRMD5Q7Z6J6 570 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 FTSJ3Q8IY81 847 aaKnown RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 TMEM105Q8N8V8 129 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 KBTBD3Q8NAB2 608 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 SYTL5Q8TDW5 730 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 DCAF4Q8WV16 495 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 CLP1Q92989 425 aaKnown RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 EMID1Q96A84 441 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 IL17RAQ96F46 866 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 RPGRIP1Q96KN7 1286 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 C11orf84Q9BUA3 381 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 LMAN2LQ9H0V9 348 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 CPVLQ9H3G5 476 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 SMOC2Q9H3U7 446 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 BCAS3Q9H6U6 928 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 PLAGL2Q9UPG8 496 aa10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 SUPT16HQ9Y5B9 1047 aaKnown RBP10.01□□□□□ -0.81
HMGB1P39-201ENST00000366304 EP300Q09472 2414 aaPredicted RBP10□□□□□ -0.81
HMGB1P39-201ENST00000366304 TREHO43280 583 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 ITGB1P05556 798 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 RB1P06400 928 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 ICAM3P32942 547 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 SP2Q02086 613 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 PTPN21Q16825 1174 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 HSDL1Q3SXM5 330 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 FIBCD1Q8N539 461 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 EFHBQ8N7U6 833 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 PPTC7Q8NI37 304 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 KCNV2Q8TDN2 545 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 SEPT8Q92599 483 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 ZNF689Q96CS4 500 aaPredicted RBP10□□□□□ -0.81
HMGB1P39-201ENST00000366304 C16orf70Q9BSU1 422 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 ZNF287Q9HBT7 754 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 TELO2Q9Y4R8 837 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 RALGAPA2Q2PPJ7 1873 aa10□□□□□ -0.81
HMGB1P39-201ENST00000366304 CHD6Q8TD26 2715 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 FRYLO94915 3013 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 RAB11FIP3O75154 756 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 KDM4AO75164 1064 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 NRIP1P48552 1158 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 USH1GQ495M9 461 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 RBM23Q86U06 439 aaKnown RBP9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 DHX37Q8IY37 1157 aaKnown RBP9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 ADSSL1Q8N142 457 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 SPPL3Q8TCT6 385 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 SUSD6Q92537 303 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 GPKOWQ92917 476 aaPredicted RBP eCLIP9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 RIPOR3Q96MK2 946 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 TMEM47Q9BQJ4 181 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 PHF7Q9BWX1 381 aaPredicted RBP9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 CDH22Q9UJ99 828 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 MRPL42Q9Y6G3 142 aaKnown RBP9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 ADGRA3Q8IWK6 1321 aa9.99□□□□□ -0.81
HMGB1P39-201ENST00000366304 TSPY2A6NKD2 308 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 PDHBP11177 359 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 SP100P23497 879 aaPredicted RBP9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 NBR1Q14596 966 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 MYSM1Q5VVJ2 828 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 CRIPAKQ8N1N5 446 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 RGS22Q8NE09 1264 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 LINC01599Q8WXQ3 324 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 ATP6V0A1Q93050 837 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 RNF166Q96A37 237 aaPredicted RBP9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 RMDN1Q96DB5 314 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 EPAS1Q99814 870 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 KATNAL1Q9BW62 490 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 RNPEPQ9H4A4 650 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 WDR19Q8NEZ3 1342 aa9.98□□□□□ -0.81
HMGB1P39-201ENST00000366304 C17orf102A2RUQ5 167 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 TK2O00142 265 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 ENPP3O14638 875 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 OPLAHO14841 1288 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 PER2O15055 1255 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 RANBP6O60518 1105 aaKnown RBP9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 CHRNA1P02708 482 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 GOLGA8HP0CJ92 632 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 SMIM10L2AP0DMW4 78 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 SMIM10L2BP0DMW5 78 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 SNHG28P0DPA3 235 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 GNAT2P19087 354 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 EIF2AK2P19525 551 aaKnown RBP9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 ZNF543Q08ER8 600 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 LAMC2Q13753 1193 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 FAM26DQ5JW98 314 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 VPS53Q5VIR6 699 aa9.97□□□□□ -0.81
HMGB1P39-201ENST00000366304 KLHL23Q8NBE8 558 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms