RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 EPAS1Q99814 870 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 SLC39A2Q9NP94 309 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 LMTK2Q8IWU2 1503 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 ADALQ6DHV7 355 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 ARMCX2Q7L311 632 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 EEPD1Q7L9B9 569 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 GPKOWQ92917 476 aaPredicted RBP eCLIP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 VGLL3A8MV65 326 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 GADD45BO75293 160 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 NNMTP40261 264 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 GOLGA8FQ08AF8 430 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 GOLGA8DPQ0D2H9 430 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 LRCH2Q5VUJ6 765 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 UNC5CLQ8IV45 518 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 YAF2Q8IY57 180 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 CLCA2Q9UQC9 943 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 UBN2Q6ZU65 1347 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 LUC7L3O95232 432 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 H2AFZP0C0S5 128 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 LBRQ14739 615 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 SUPT20HL1Q3ZLR7 823 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 H2AFVQ71UI9 128 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 BRINP3Q76B58 766 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 ENOX1Q8TC92 643 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 FAM227BQ96M60 508 aa10.99□□□□□ -0.65
CLIP1-202ENST00000358808 HEXIM2Q96MH2 286 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 CHCHD3Q9NX63 227 aaKnown RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 NFKBIL1Q9UBC1 381 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-202ENST00000358808 PRPSAP2O60256 369 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 IMPG1Q17R60 797 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 DCAF4L1Q3SXM0 396 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 SPICE1Q8N0Z3 855 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 THEM5Q8N1Q8 247 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 CALN1Q9BXU9 219 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 STX18Q9P2W9 335 aaKnown RBP10.98□□□□□ -0.65
CLIP1-202ENST00000358808 ATF5Q9Y2D1 282 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-202ENST00000358808 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-202ENST00000358808 ADGRL3Q9HAR2 1447 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 PLA2R1Q13018 1463 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 USP17L12C9JPN9 530 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 USP17L21D6R901 530 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 GYG1P46976 350 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF654Q8IZM8 581 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 ABTB1Q969K4 478 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-202ENST00000358808 DACH2Q96NX9 599 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 NDUFB9Q9Y6M9 179 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 EIF4A1P60842 406 aaKnown RBP10.98□□□□□ -0.65
CLIP1-202ENST00000358808 EXOC3L4Q17RC7 722 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 KBTBD3Q8NAB2 608 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 CCDC51Q96ER9 411 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 GSDMAQ96QA5 445 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 LOC102724428A0A0B4J2F2 783 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 E2F6O75461 281 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 TAC1P20366 129 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 CRKLP46109 303 aaKnown RBP10.98□□□□□ -0.65
CLIP1-202ENST00000358808 SIK1P57059 783 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 DNAJC24Q6P3W2 148 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 TRIM55Q9BYV6 548 aa10.98□□□□□ -0.65
CLIP1-202ENST00000358808 NEURL1BA8MQ27 555 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PRPF4O43172 522 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 HSPD1P10809 573 aaKnown RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 BCAMP50895 628 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ANO4Q32M45 955 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 OR8K1Q8NGG5 319 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 IFT43Q96FT9 208 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SPZ1Q9BXG8 430 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 HPCAL4Q9UM19 191 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 BRD1O95696 1058 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ARL4DP49703 201 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 KIAA1755Q5JYT7 1200 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 TTC23LQ6PF05 361 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SCARA5Q6ZMJ2 495 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 NUDCD3Q8IVD9 361 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ACCSQ96QU6 501 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SUN2Q9UH99 717 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ZMYM4Q5VZL5 1548 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 KLRF2D3W0D1 207 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SUN1O94901 812 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PAMP19021 973 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ACCSLQ4AC99 568 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 TCP11X2Q5H9J9 407 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PDXDC1Q6P996 788 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 FAM180AQ6UWF9 173 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SLC26A7Q8TE54 656 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 KIFC3Q9BVG8 833 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 KIF17Q9P2E2 1029 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 FRMD3A2A2Y4 597 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 LRRD1A4D1F6 860 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 MT-ND3P03897 115 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 IFNAR2P48551 515 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF445P59923 1031 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PATL1Q86TB9 770 aaKnown RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ZBTB38Q8NAP3 1195 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PBXIP1Q96AQ6 731 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 CAPS2Q9BXY5 557 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 FER1L4A9Z1Z3 1794 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 ZSCAN9O15535 394 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 CD58P19256 250 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 MAP3K7CLP57077 242 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms