RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ADGRL2O95490 1459 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 TMEM2Q9UHN6 1383 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 MAP3K7O43318 606 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 LMNAP02545 664 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 CLTAP09496 248 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 SRGAP2CP0DJJ0 459 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 DDX5P17844 614 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 PMLP29590 882 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 LRRC63Q05C16 580 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 CUL1Q13616 776 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 ADAT2Q7Z6V5 191 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 KIAA1586Q9HCI6 787 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 PRPF3O43395 683 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 MXI1P50539 228 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 BASP1P80723 227 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 TFAMQ00059 246 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 ADCY2Q08462 1091 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 SCRN1Q12765 414 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 AP3B2Q13367 1082 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 SNX1Q13596 522 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 ZNF772Q68DY9 489 aaPredicted RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 SCYL3Q8IZE3 742 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 SCG3Q8WXD2 468 aaKnown RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 EAF2Q96CJ1 260 aaPredicted RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 CEP19Q96LK0 163 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 SUDS3Q9H7L9 328 aaPredicted RBP6.97□□□□□ -1.29
UPF2-201ENST00000356352 STAP2Q9UGK3 403 aa6.97□□□□□ -1.29
UPF2-201ENST00000356352 EIF3DO15371 548 aaKnown RBP eCLIP6.96□□□□□ -1.29
UPF2-201ENST00000356352 TEDDM1Q5T9Z0 273 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 RC3H1Q5TC82 1133 aaKnown RBP6.96□□□□□ -1.29
UPF2-201ENST00000356352 USPL1Q5W0Q7 1092 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 TRIM67Q6ZTA4 783 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 C17orf53Q8N3J3 647 aaPredicted RBP6.96□□□□□ -1.29
UPF2-201ENST00000356352 CLIC6Q96NY7 704 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 LRRC37BQ96QE4 947 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 KLC2Q9H0B6 622 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 KRT82Q9NSB4 513 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 ZFYVE16Q7Z3T8 1539 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 ZBED1O96006 694 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 MMP1P03956 469 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 SLFN14P0C7P3 912 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 CA4P22748 312 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 NOP14P78316 857 aaKnown RBP6.96□□□□□ -1.29
UPF2-201ENST00000356352 C6orf118Q5T5N4 469 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 C1orf228Q6PIY5 440 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 FAM196AQ6ZSG2 479 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 LRRC43Q8N309 656 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 DCLK2Q8N568 766 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 PDCD7Q8N8D1 485 aaKnown RBP6.96□□□□□ -1.29
UPF2-201ENST00000356352 TTC13Q8NBP0 860 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 GDAP1Q8TB36 358 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 NEK9Q8TD19 979 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 DCAF4Q8WV16 495 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 MAP4K1Q92918 833 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 USP44Q9H0E7 712 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 OLA1Q9NTK5 396 aaKnown RBP6.96□□□□□ -1.29
UPF2-201ENST00000356352 PI4KBQ9UBF8 816 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 SUN2Q9UH99 717 aa6.96□□□□□ -1.29
UPF2-201ENST00000356352 LOC102724428A0A0B4J2F2 783 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 GOLGA8SH3BPF8 625 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 PTPRTO14522 1441 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 RASGRF2O14827 1237 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 PER1O15534 1290 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 TOM1L1O75674 476 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 TJP3O95049 919 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 CRKLP46109 303 aaKnown RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 SIK1P57059 783 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 ZBED6P86452 979 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 YWHAHQ04917 246 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 RNF219Q5W0B1 726 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 ARL6IP4Q66PJ3 421 aaKnown RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 PDXDC1Q6P996 788 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 DSTYKQ6XUX3 929 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 TTC39CQ8N584 583 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 TBCKQ8TEA7 893 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 HEXIM2Q96MH2 286 aaKnown RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 UBE2TQ9NPD8 197 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 AATKQ6ZMQ8 1374 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 EXOC1LA0A1B0GW35 172 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 SKIP12755 728 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 RBL2Q08999 1139 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 NR1H3Q13133 447 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 ZNF827Q17R98 1081 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 GLE1Q53GS7 698 aaKnown RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 KRT80Q6KB66 452 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 FRA10AC1Q70Z53 315 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 RTKN2Q8IZC4 609 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 PDIK1LQ8N165 341 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 TAB3Q8N5C8 712 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 RBM41Q96IZ5 413 aaKnown RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 POLR3CQ9BUI4 534 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.96□□□□□ -1.3
UPF2-201ENST00000356352 LSG1Q9H089 658 aaKnown RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 EMILIN3Q9NT22 766 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 SCHIP1Q9P0W5 487 aaPredicted RBP6.96□□□□□ -1.3
UPF2-201ENST00000356352 SCOCQ9UIL1 159 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 SERPINB13Q9UIV8 391 aa6.96□□□□□ -1.3
UPF2-201ENST00000356352 PNMA6FA0A0J9YX94 578 aa6.95□□□□□ -1.3
UPF2-201ENST00000356352 CCNE1P24864 410 aa6.95□□□□□ -1.3
UPF2-201ENST00000356352 DR1Q01658 176 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms