RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 C9orf50Q5SZB4 431 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 TMED8Q6PL24 325 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-201ENST00000355766 TRIM42Q8IWZ5 723 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 USP38Q8NB14 1042 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 TTC16Q8NEE8 873 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 EAF2Q96CJ1 260 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-201ENST00000355766 MYRFLQ96LU7 910 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 ASCC2Q9H1I8 757 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-201ENST00000355766 C7orf69Q9H7B7 122 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 USP40Q9NVE5 1235 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 PRKAG2Q9UGJ0 569 aa8.27□□□□□ -1.09
VPS13A-201ENST00000355766 HMX2A2RU54 273 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 DDTLA6NHG4 134 aaPredicted RBP8.26□□□□□ -1.09
VPS13A-201ENST00000355766 IFIT1P09914 478 aaKnown RBP8.26□□□□□ -1.09
VPS13A-201ENST00000355766 FGFR2P21802 821 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 MCCP23508 829 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 CHMLP26374 656 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 HMGCS2P54868 508 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 NLRP12P59046 1061 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 TFCP2Q12800 502 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 HGSNATQ68CP4 663 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 ZDHHC13Q8IUH4 622 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 ZSCAN29Q8IWY8 852 aaPredicted RBP8.26□□□□□ -1.09
VPS13A-201ENST00000355766 SNX21Q969T3 373 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 APBA2Q99767 749 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 SENP6Q9GZR1 1112 aaPredicted RBP8.26□□□□□ -1.09
VPS13A-201ENST00000355766 OSGEPQ9NPF4 335 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 DBNLQ9UJU6 430 aaKnown RBP8.26□□□□□ -1.09
VPS13A-201ENST00000355766 POLIQ9UNA4 740 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 GAKO14976 1311 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 SALL1Q9NSC2 1324 aa8.26□□□□□ -1.09
VPS13A-201ENST00000355766 FRMPD3Q5JV73 1810 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 LDHBP07195 334 aaKnown RBP8.25□□□□□ -1.09
VPS13A-201ENST00000355766 RGS2P41220 211 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 MFAP1P55081 439 aaKnown RBP8.25□□□□□ -1.09
VPS13A-201ENST00000355766 RTP1P59025 263 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 SPP2Q13103 211 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 RABEP1Q15276 862 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 CCL14Q16627 93 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 SLC7A3Q8WY07 619 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 USP6NLQ92738 828 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 PMEPA1Q969W9 287 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 HAUS7Q99871 368 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 SIL1Q9H173 461 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 DDX4Q9NQI0 724 aaKnown RBP8.25□□□□□ -1.09
VPS13A-201ENST00000355766 SOX13Q9UN79 622 aa8.25□□□□□ -1.09
VPS13A-201ENST00000355766 A0A1B0GUL7 405 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 DNM1LO00429 736 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 SGSM2O43147 1006 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 SLC5A1P13866 664 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 MAPK4P31152 587 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 IRX3P78415 501 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-201ENST00000355766 MAP3K12Q12852 859 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 PICALMQ13492 652 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 CCDC158Q5M9N0 1113 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 RNF43Q68DV7 783 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 GPR142Q7Z601 462 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 FAM20CQ8IXL6 584 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 TMEM102Q8N9M5 508 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-201ENST00000355766 NXPE3Q969Y0 559 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 USP26Q9BXU7 913 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 OSBPL5Q9H0X9 879 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-201ENST00000355766 TXNRD2Q9NNW7 524 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 DIAPH3Q9NSV4 1193 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 DDX20Q9UHI6 824 aaKnown RBP8.24□□□□□ -1.09
VPS13A-201ENST00000355766 ATP11BQ9Y2G3 1177 aa8.24□□□□□ -1.09
VPS13A-201ENST00000355766 PDS5AQ29RF7 1337 aaKnown RBP8.24□□□□□ -1.09
VPS13A-201ENST00000355766 EREGO14944 169 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 MSCO60682 206 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 PEX10O60683 326 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 COBLO75128 1261 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 ZFYP08048 801 aaPredicted RBP8.23□□□□□ -1.09
VPS13A-201ENST00000355766 UQCRFS1P1P0C7P4 283 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 PREPP48147 710 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 HERVK_113P62684 666 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 ATP2B3Q16720 1220 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 ANKRD34AQ69YU3 496 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 ALKBH2Q6NS38 261 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 GPRC5AQ8NFJ5 357 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 KLHDC4Q8TBB5 520 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 ATXN2LQ8WWM7 1075 aaKnown RBP8.23□□□□□ -1.09
VPS13A-201ENST00000355766 LPIN2Q92539 896 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 LPAR1Q92633 364 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 BADQ92934 168 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 OSMRQ99650 979 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 ZKSCAN3Q9BRR0 538 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 RUSC1Q9BVN2 902 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 PORCNQ9H237 461 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 PRDM5Q9NQX1 630 aaPredicted RBP8.23□□□□□ -1.09
VPS13A-201ENST00000355766 PDLIM7Q9NR12 457 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 THEGQ9P2T0 379 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 SYNGAP1Q96PV0 1343 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 MYH13Q9UKX3 1938 aa8.23□□□□□ -1.09
VPS13A-201ENST00000355766 KIAA1324LA8MWY0 1029 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 SART1O43290 800 aaKnown RBP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 TNFRSF21O75509 655 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 BMP3P12645 472 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 NPR3P17342 541 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 HOXA7P31268 230 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 BTDP43251 543 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms