RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 RETREG2Q8NC44 543 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 ASCC2Q9H1I8 757 aaPredicted RBP18.91■□□□□ 0.62
SMAD4-201ENST00000342988 H2AFY2Q9P0M6 372 aaPredicted RBP18.91■□□□□ 0.62
SMAD4-201ENST00000342988 SYNCRIPO60506 623 aaKnown RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 TRIM13O60858 407 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 NPM3O75607 178 aaKnown RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 KRT37O76014 449 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 MYL7Q01449 175 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 ULK4Q96C45 1275 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 IQSEC3Q9UPP2 1182 aaPredicted RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 E5RI56 91 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 COPS2P61201 443 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 KIAA1755Q5JYT7 1200 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 KCTD16Q68DU8 428 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 KDM5AP29375 1690 aaKnown RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 CASKIN1Q8WXD9 1431 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 ASXL1Q8IXJ9 1541 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 CC2D2BQ6DHV5 1058 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 GID8Q9NWU2 228 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 MAP3K13O43283 966 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 AP1S2P56377 157 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 TTC23LQ6PF05 361 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 PYROXD1Q8WU10 500 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 FHDC1Q9C0D6 1143 aaPredicted RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 SOX6P35712 828 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 FOXD4Q12950 439 aaPredicted RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 EIF2B5Q13144 721 aaKnown RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 ALKBH8Q96BT7 664 aaKnown RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 PHACTR3Q96KR7 559 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 SAP30BPQ9UHR5 308 aaKnown RBP18.9■□□□□ 0.62
SMAD4-201ENST00000342988 BUB1O43683 1085 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 UBE3AQ05086 875 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 KRT27Q7Z3Y8 459 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 CEP95Q96GE4 821 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 CBX8Q9HC52 389 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 ABCF3Q9NUQ8 709 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 CLCA2Q9UQC9 943 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 COL4A3BPQ9Y5P4 624 aa18.9■□□□□ 0.62
SMAD4-201ENST00000342988 TTC30BQ8N4P2 665 aa18.89■□□□□ 0.62
SMAD4-201ENST00000342988 TTC17Q96AE7 1141 aa18.89■□□□□ 0.62
SMAD4-201ENST00000342988 SH3GL1Q99961 368 aa18.89■□□□□ 0.62
SMAD4-201ENST00000342988 AIPL1Q9NZN9 384 aa18.89■□□□□ 0.62
SMAD4-201ENST00000342988 CHPF2Q9P2E5 772 aa18.89■□□□□ 0.62
SMAD4-201ENST00000342988 PGRMC1O00264 195 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 NDUFA5Q16718 116 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 FASTKD5Q7L8L6 764 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 GCOM2Q9BZD3 368 aaPredicted RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 FNDC3AQ9Y2H6 1198 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 TNFAIP1Q13829 316 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 ADAT2Q7Z6V5 191 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 PDIK1LQ8N165 341 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 NSFL1CQ9UNZ2 370 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 CSADQ9Y600 493 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 DNAJC6O75061 913 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 GALNT17Q6IS24 598 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 THAP11Q96EK4 314 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 TCEANC2Q96MN5 208 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 THUMPD2Q9BTF0 503 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 TMEM161AQ9NX61 479 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 ADA2Q9NZK5 511 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 C11orf95C9JLR9 678 aaPredicted RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 PRPSAP2O60256 369 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 TBL3Q12788 808 aaKnown RBP18.89■□□□□ 0.61
SMAD4-201ENST00000342988 KLHL24Q6TFL4 600 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 DYMQ7RTS9 669 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 MYLK2Q9H1R3 596 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 UVRAGQ9P2Y5 699 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 LRFN2Q9ULH4 789 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 WDR17Q8IZU2 1322 aa18.89■□□□□ 0.61
SMAD4-201ENST00000342988 EXOC3L4Q17RC7 722 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 TROQ12816 1431 aaPredicted RBP18.88■□□□□ 0.61
SMAD4-201ENST00000342988 PDHA1P08559 390 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 KRT76Q01546 638 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 RGS9BPQ6ZS82 235 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 MRPL48Q96GC5 212 aaKnown RBP18.88■□□□□ 0.61
SMAD4-201ENST00000342988 PIGUQ9H490 435 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 TJP3O95049 919 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 RXRAP19793 462 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 PPP1R14AQ96A00 147 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 CNGB3Q9NQW8 809 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 FARP1Q9Y4F1 1045 aaPredicted RBP18.88■□□□□ 0.61
SMAD4-201ENST00000342988 KSR1Q8IVT5 923 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 GJA3Q9Y6H8 435 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 CHURC1Q8WUH1 139 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 RSPH1Q8WYR4 309 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 FANCEQ9HB96 536 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.88■□□□□ 0.61
SMAD4-201ENST00000342988 COQ7Q99807 217 aa18.88■□□□□ 0.61
SMAD4-201ENST00000342988 DMAP1Q9NPF5 467 aaPredicted RBP18.88■□□□□ 0.61
SMAD4-201ENST00000342988 SLFN12LQ6IEE8 588 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 BRD8Q9H0E9 1235 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 PCDHA12Q9UN75 941 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 ARMCX2Q7L311 632 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 EXOC4Q96A65 974 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 PBXIP1Q96AQ6 731 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 TARSL2A2RTX5 802 aaKnown RBP18.87■□□□□ 0.61
SMAD4-201ENST00000342988 INPP5AQ14642 412 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 BTBD6Q96KE9 485 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 ZMYND12Q9H0C1 365 aa18.87■□□□□ 0.61
SMAD4-201ENST00000342988 ADNPQ9H2P0 1102 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms