RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 KSR1Q8IVT5 923 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 CSGALNACT2Q8N6G5 542 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 ZNF713Q8N859 430 aaPredicted RBP14.47□□□□□ -0.09
COL18A1-201ENST00000342220 ANKRD20A12PQ8NF67 263 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 JRKLQ9Y4A0 524 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 CEP83Q9Y592 693 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 FOCADQ5VW36 1801 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 EDIL3O43854 480 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 RDH13Q8NBN7 331 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 ERMNQ8TAM6 284 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 ZBED3Q96IU2 234 aaPredicted RBP14.47□□□□□ -0.09
COL18A1-201ENST00000342220 DNM3Q9UQ16 869 aa14.47□□□□□ -0.09
COL18A1-201ENST00000342220 STX10O60499 249 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 PGK2P07205 417 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 PLA2G4BP0C869 781 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 NOVP48745 357 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 PMS1P54277 932 aaKnown RBP14.46□□□□□ -0.09
COL18A1-201ENST00000342220 COG2Q14746 738 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 SLC10A4Q96EP9 437 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 CDCA5Q96FF9 252 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 GSDMAQ96QA5 445 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 TRIM9Q9C026 710 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 KIAA1683Q9H0B3 1180 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 PPP1R9AQ9ULJ8 1098 aa14.46□□□□□ -0.09
COL18A1-201ENST00000342220 IPO5O00410 1097 aaKnown RBP14.46□□□□□ -0.1
COL18A1-201ENST00000342220 FOSP01100 380 aaPredicted RBP14.46□□□□□ -0.1
COL18A1-201ENST00000342220 CYP2C8P10632 490 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 MTF1Q14872 753 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 E2F4Q16254 413 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 ZSCAN26Q16670 478 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 FILIP1LQ4L180 1135 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 CEP55Q53EZ4 464 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 TCERG1LQ5VWI1 586 aa14.46□□□□□ -0.1
COL18A1-201ENST00000342220 VWA5AO00534 786 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 TBC1D12O60347 775 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 CCDC172P0C7W6 258 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 PNMA6AP0CW24 399 aaPredicted RBP14.45□□□□□ -0.1
COL18A1-201ENST00000342220 CNTN2Q02246 1040 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 PNMA5Q96PV4 448 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 WDR18Q9BV38 432 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 RSPH10B2B2RC85 870 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 SEC31AO94979 1220 aaKnown RBP14.45□□□□□ -0.1
COL18A1-201ENST00000342220 RSPH10BP0C881 870 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 CATSPER3Q86XQ3 398 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 ZNF668Q96K58 619 aaPredicted RBP14.45□□□□□ -0.1
COL18A1-201ENST00000342220 MTMR9Q96QG7 549 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 CDK5RAP2Q96SN8 1893 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 GLT8D2Q9H1C3 349 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 EHMT1Q9H9B1 1298 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 RMND1Q9NWS8 449 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 LAD1O00515 517 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 AP3B2Q13367 1082 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 NR1I3Q14994 352 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 PPP1R18Q6NYC8 613 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 MIER3Q7Z3K6 550 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 TRIML1Q8N9V2 468 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 LPAR1Q92633 364 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 PANK4Q9NVE7 773 aa14.45□□□□□ -0.1
COL18A1-201ENST00000342220 EFCAB8A8MWE9 144 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 TBCAO75347 108 aaKnown RBP14.44□□□□□ -0.1
COL18A1-201ENST00000342220 ICAM1P05362 532 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 UBXN1Q04323 297 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 MTMR1Q13613 665 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 TMCO3Q6UWJ1 677 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.44□□□□□ -0.12e-6■■■■□ 19.5
COL18A1-201ENST00000342220 IKZF4Q9H2S9 585 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 KIF13BQ9NQT8 1826 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 PLA2G4AP47712 749 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 TMEM132BQ14DG7 1078 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 PPFIBP1Q86W92 1011 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 SPATA20Q8TB22 786 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 OPTNQ96CV9 577 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 EIF2AK1Q9BQI3 630 aaKnown RBP14.44□□□□□ -0.1
COL18A1-201ENST00000342220 CRACR2AQ9BSW2 395 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 IRX2Q9BZI1 471 aaPredicted RBP14.44□□□□□ -0.1
COL18A1-201ENST00000342220 R3HDMLQ9H3Y0 253 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 KCNH7Q9NS40 1196 aa14.44□□□□□ -0.1
COL18A1-201ENST00000342220 SOWAHDA6NJG2 315 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 USO1O60763 962 aaKnown RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 ZRANB2O95218 330 aaKnown RBP eCLIP14.43□□□□□ -0.13e-6■■■■□ 20.5
COL18A1-201ENST00000342220 GCFC2P16383 781 aaKnown RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 HAUS3Q68CZ6 603 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 MYCT1Q8N699 235 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 AK8Q96MA6 479 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 CCSER1Q9C0I3 900 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 RANBP17Q9H2T7 1088 aaKnown RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 MRPL44Q9H9J2 332 aaKnown RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 ARGLU1Q9NWB6 273 aaPredicted RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 CWC15Q9P013 229 aaKnown RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 A0A1B0GTH6 734 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 CLIC2O15247 247 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 GCNT3O95395 438 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 SYTL5Q8TDW5 730 aaPredicted RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 MTMR8Q96EF0 704 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 DEF6Q9H4E7 631 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 BLOC1S4Q9NUP1 217 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 PRPF6O94906 941 aaKnown RBP14.43□□□□□ -0.1
COL18A1-201ENST00000342220 USP11P51784 963 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 CCDC40Q4G0X9 1142 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 SLFN12Q8IYM2 578 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms