RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GPBP1Q86WP2 473 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 NCAPG2Q86XI2 1143 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 GTF3C2Q8WUA4 911 aaPredicted RBP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 DHTKD1Q96HY7 919 aaPredicted RBP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 XPO4Q9C0E2 1151 aaKnown RBP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 SAMSN1Q9NSI8 373 aaKnown RBP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 PNMA3Q9UL41 463 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 MAPK8IP1Q9UQF2 711 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 PSMA7O14818 248 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 ATP9AO75110 1047 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 ITGBL1O95965 494 aaPredicted RBP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 SSBP05455 408 aaKnown RBP eCLIP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 ERCC3P19447 782 aa17.24■□□□□ 0.35
LIMS1-202ENST00000338045 CTTNQ14247 550 aaKnown RBP17.24■□□□□ 0.35
LIMS1-202ENST00000338045 GOLGA6L6A8MZA4 724 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 ZBTB48P10074 688 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-202ENST00000338045 IDEP14735 1019 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 CNTN2Q02246 1040 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 Q3C1V9 767 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 CST9Q5W186 159 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 MIER3Q7Z3K6 550 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 TPH2Q8IWU9 490 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 FAM133AQ8N9E0 248 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 SPC24Q8NBT2 197 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 CDHR1Q96JP9 859 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 PKD2L1Q9P0L9 805 aa17.23■□□□□ 0.35
LIMS1-202ENST00000338045 WRAP73Q9P2S5 460 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-202ENST00000338045 DDX39AO00148 427 aaKnown RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 EDNRBP24530 442 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 ALDH5A1P51649 535 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 UBASH3AP57075 661 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 RBM10P98175 930 aaKnown RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 COASYQ13057 564 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 SPRYD7Q5W111 196 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 CCDC65Q8IXS2 484 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 BRI3BPQ8WY22 251 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 NACC1Q96RE7 527 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 BHMT2Q9H2M3 363 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 PANK4Q9NVE7 773 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 CCL15-CCL14A0A0B4J2E2 113 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 BTBD19C9JJ37 291 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 CBFA2T2O43439 604 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 SERPINC1P01008 464 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 P4HBP07237 508 aaKnown RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 KCNA2P16389 499 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 PMS1P54277 932 aaKnown RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 KRT76Q01546 638 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 CCL15Q16663 113 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 TTI2Q6NXR4 508 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 APTXQ7Z2E3 356 aaKnown RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 ANKRD23Q86SG2 305 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 GUF1Q8N442 669 aaKnown RBP17.22■□□□□ 0.35
LIMS1-202ENST00000338045 SHCBP1Q8NEM2 672 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 RDM1Q8NG50 284 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 HPS3Q969F9 1004 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 SENP7Q9BQF6 1050 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 LXNQ9BS40 222 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 R3HDMLQ9H3Y0 253 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 SLC39A2Q9NP94 309 aa17.22■□□□□ 0.35
LIMS1-202ENST00000338045 SPATA31C2B4DYI2 1134 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 POTEB2H3BUK9 544 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 EIF3JO75822 258 aaKnown RBP17.21■□□□□ 0.35
LIMS1-202ENST00000338045 LYPLA2O95372 231 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 TPM3P06753 285 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 CCNE1P24864 410 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 SFNP31947 248 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 ICAM3P32942 547 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 ERVK-9P63128 1117 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 ERVK-24P63145 666 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 GIT2Q14161 759 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 STXBP2Q15833 593 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 GNPTABQ3T906 1256 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 CHADLQ6NUI6 762 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 DRC7Q8IY82 874 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 MROH8Q9H579 483 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 ADD3Q9UEY8 706 aaKnown RBP17.21■□□□□ 0.35
LIMS1-202ENST00000338045 PCDHA2Q9Y5H9 948 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 NFASCO94856 1347 aa17.21■□□□□ 0.35
LIMS1-202ENST00000338045 DNAJC25-GNG10A0A024R161 153 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 NPHP3-ACAD11A0A0J9YXS1 232 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 SOWAHBA6NEL2 793 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 PDHXO00330 501 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 CCNE2O96020 404 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 CYP2C8P10632 490 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 CDK11BP21127 795 aaKnown RBP17.2■□□□□ 0.34
LIMS1-202ENST00000338045 JAK3P52333 1124 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 HSP90AA4PQ58FG1 418 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 FAM26FQ5R3K3 315 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 CENPPQ6IPU0 288 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 ZNF746Q6NUN9 644 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-202ENST00000338045 ZSCAN30Q86W11 494 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 PIGOQ8TEQ8 1089 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 P2RX5Q93086 422 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 NAP1L5Q96NT1 182 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-202ENST00000338045 ZSWIM4Q9H7M6 989 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 BICDL2A1A5D9 508 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 TRIM49BA6NDI0 452 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 DCAF8L1A6NGE4 600 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 WDR64B1ANS9 1081 aa17.2■□□□□ 0.34
LIMS1-202ENST00000338045 RINT1Q6NUQ1 792 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms