RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DAAM1Q9Y4D1 1078 aa13.63□□□□□ -0.23
SDC3-201ENST00000336798 WDR64B1ANS9 1081 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 ECEL1O95672 775 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 BRD1O95696 1058 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 KIF19Q2TAC6 998 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 ADCK5Q3MIX3 580 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 PI16Q6UXB8 463 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 BABAM1Q9NWV8 329 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 SUN1O94901 812 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 MT-ND3P03897 115 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 SERPINB2P05120 415 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 ANTXR1Q9H6X2 564 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 SPTLC3Q9NUV7 552 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 FAM8A1Q9UBU6 413 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 HADHAP40939 763 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 MYO1EQ12965 1108 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 PROSER3Q2NL68 480 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 BBS9Q3SYG4 887 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 TTC25Q96NG3 672 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 HAUS4Q9H6D7 363 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 SCHIP1Q9P0W5 487 aaPredicted RBP13.62□□□□□ -0.23
SDC3-201ENST00000336798 UHRF1BP1Q6BDS2 1440 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 COL17A1Q9UMD9 1497 aaPredicted RBP13.62□□□□□ -0.23
SDC3-201ENST00000336798 EIF2AK4Q9P2K8 1649 aaKnown RBP13.62□□□□□ -0.23
SDC3-201ENST00000336798 USP17L3A6NCW0 530 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 USP17L4A6NCW7 530 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 PDCD2Q16342 344 aaPredicted RBP13.62□□□□□ -0.23
SDC3-201ENST00000336798 USP17L1Q7RTZ2 530 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 ADD3Q9UEY8 706 aaKnown RBP13.62□□□□□ -0.23
SDC3-201ENST00000336798 KCNA1Q09470 495 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 SYDE2Q5VT97 1194 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 IL17REQ8NFR9 667 aa13.62□□□□□ -0.23
SDC3-201ENST00000336798 MAP3K15Q6ZN16 1313 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 PRAMEF22A3QJZ6 481 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 BMP3P12645 472 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 GALNT17Q6IS24 598 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 PDXDC2PQ6P474 469 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 ZSWIM6Q9HCJ5 1215 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 SLC8A2Q9UPR5 921 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 MED7O43513 233 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 USP14P54578 494 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 OCRLQ01968 901 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 ZBTB17Q13105 803 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 TBCCQ15814 346 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 RASEFQ8IZ41 740 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 GPT2Q8TD30 523 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 SEPT8Q92599 483 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 RPF1Q9H9Y2 349 aaKnown RBP13.61□□□□□ -0.23
SDC3-201ENST00000336798 PIK3C2GO75747 1445 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 YEATS2Q9ULM3 1422 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 H3BRJ5 948 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 ATICP31939 592 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 ATP6V1E1P36543 226 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 LMNB2Q03252 620 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 NR5A1Q13285 461 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 TRIM59Q8IWR1 403 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 LCORLQ8N3X6 602 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 CCDC197Q8NCU1 140 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 P2RX5Q93086 422 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 RAPGEF6Q8TEU7 1601 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 SOWAHDA6NJG2 315 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 FOSP01100 380 aaPredicted RBP13.61□□□□□ -0.23
SDC3-201ENST00000336798 CACNB3P54284 484 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 ASPRV1Q53RT3 343 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 PASD1Q8IV76 773 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 FLAD1Q8NFF5 587 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 CYTH2Q99418 400 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 SARS2Q9NP81 518 aaKnown RBP13.61□□□□□ -0.23
SDC3-201ENST00000336798 PYCARDQ9ULZ3 195 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 PCDHA5Q9Y5H7 936 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 PCCAP05165 728 aaPredicted RBP13.61□□□□□ -0.23
SDC3-201ENST00000336798 PPP6R3Q5H9R7 873 aaPredicted RBP13.61□□□□□ -0.23
SDC3-201ENST00000336798 NCLNQ969V3 563 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 POLD4Q9HCU8 107 aa13.61□□□□□ -0.23
SDC3-201ENST00000336798 ARHGEF10O15013 1369 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 MSTO1Q9BUK6 570 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 TBX22Q9Y458 520 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 PDE8BO95263 885 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 ARHGDIAP52565 204 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 FRA10AC1Q70Z53 315 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 ZNF467Q7Z7K2 595 aaPredicted RBP13.6□□□□□ -0.23
SDC3-201ENST00000336798 THNSL1Q8IYQ7 743 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 SUPT20HL1Q3ZLR7 823 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 SCN4BQ8IWT1 228 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 SNX19Q92543 992 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 ATP8B3O60423 1300 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 HDLBPQ00341 1268 aaKnown RBP13.6□□□□□ -0.23
SDC3-201ENST00000336798 ZNF589Q86UQ0 364 aaPredicted RBP13.6□□□□□ -0.23
SDC3-201ENST00000336798 NR1H4Q96RI1 486 aaPredicted RBP13.6□□□□□ -0.23
SDC3-201ENST00000336798 KITP10721 976 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 KRT10P13645 584 aa13.6□□□□□ -0.23
SDC3-201ENST00000336798 CAPRIN1Q14444 709 aaKnown RBP13.6□□□□□ -0.23
SDC3-201ENST00000336798 GOLGA8MH3BSY2 632 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 SSTR3P32745 418 aaPredicted RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 BLVRAP53004 296 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 DHX9Q08211 1270 aaKnown RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 ARHGEF6Q15052 776 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 SKIV2LQ15477 1246 aaKnown RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 RNF219Q5W0B1 726 aaPredicted RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 KIF1CO43896 1103 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms