RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 MRRFQ96E11 262 aaKnown RBP16.04■□□□□ 0.16
TCOF1-201ENST00000323668 CNOT10Q9H9A5 744 aaKnown RBP16.04■□□□□ 0.16
TCOF1-201ENST00000323668 NARFQ9UHQ1 456 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 USTQ9Y2C2 406 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 E2F4Q16254 413 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 TBC1D9BQ66K14 1250 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 ERGIC2Q96RQ1 377 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 DNAJC7Q99615 494 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 UBAP1LF5GYI3 381 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 RPS6KA4O75676 772 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 HSPA6P17066 643 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 KRT15P19012 456 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 VPS41P49754 854 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 PKN1Q16512 942 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 FGGP02679 453 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 MYCLP12524 364 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 ALDH1B1P30837 517 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 ABCB5Q2M3G0 1257 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 VTI1AQ96AJ9 217 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 MYCBPQ99417 103 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 ANKZF1Q9H8Y5 726 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 THRAP3Q9Y2W1 955 aaKnown RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 MRPL11Q9Y3B7 192 aaKnown RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 C3P01024 1663 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 H3BQF6 201 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 ZBTB5O15062 677 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 SASH3O75995 380 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 SNCBQ16143 134 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 NEK9Q8TD19 979 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 CCDC127Q96BQ5 260 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 CD209Q9NNX6 404 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 PACSIN2Q9UNF0 486 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 JCADQ9P266 1359 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 A0A1W2PQJ5 194 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 CLTAP09496 248 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 SLC8A1P32418 973 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 ADCY8P40145 1251 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 SF3B2Q13435 895 aaKnown RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 KLHL14Q9P2G3 628 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 PLAGL2Q9UPG8 496 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 NTSR2O95665 410 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 KLK7P49862 253 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 PDXDC2PQ6P474 469 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 TEKT3Q9BXF9 490 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 TAF1DQ9H5J8 278 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-201ENST00000323668 PARVGQ9HBI0 331 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 INTS13Q9NVM9 706 aa16.03■□□□□ 0.16
TCOF1-201ENST00000323668 POTEB3A0JP26 581 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 POTECB2RU33 542 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 DKC1O60832 514 aaKnown RBP eCLIP16.02■□□□□ 0.16
TCOF1-201ENST00000323668 NAALADL2Q58DX5 795 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 POTEBQ6S5H4 581 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 FAM196AQ6ZSG2 479 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 RIOK1Q9BRS2 568 aaKnown RBP16.02■□□□□ 0.16
TCOF1-201ENST00000323668 ACTR5Q9H9F9 607 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-201ENST00000323668 RAB21Q9UL25 225 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L15C9J2P7 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L13C9JLJ4 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L11C9JVI0 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L18D6R9N7 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L22D6RA61 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L17D6RBQ6 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L19D6RCP7 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L20D6RJB6 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 STXBP3O00186 592 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 DR1Q01658 176 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L24Q0WX57 530 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 USP17L6PQ6QN14 398 aa16.02■□□□□ 0.16
TCOF1-201ENST00000323668 MYMKA6NI61 221 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 CDC37Q16543 378 aaPredicted RBP16.02■□□□□ 0.15
TCOF1-201ENST00000323668 FBXO33Q7Z6M2 555 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 NACC1Q96RE7 527 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 MON2Q7Z3U7 1717 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 MXRA7P84157 204 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 EARS2Q5JPH6 523 aaKnown RBP16.02■□□□□ 0.15
TCOF1-201ENST00000323668 HHATQ5VTY9 493 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 SFR1Q86XK3 245 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 MMGT1Q8N4V1 131 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 CCDC63Q8NA47 563 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 DDX47Q9H0S4 455 aaKnown RBP16.02■□□□□ 0.15
TCOF1-201ENST00000323668 PTPN22Q9Y2R2 807 aa16.02■□□□□ 0.15
TCOF1-201ENST00000323668 THAP12O43422 761 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 HARSP12081 509 aaKnown RBP16.01■□□□□ 0.15
TCOF1-201ENST00000323668 PPP1R18Q6NYC8 613 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 GRK7Q8WTQ7 553 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 ATP6V1G3Q96LB4 118 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 LACRTQ9GZZ8 138 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 ZMYND12Q9H0C1 365 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 AGTPBP1Q9UPW5 1226 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 ZNF335Q9H4Z2 1342 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-201ENST00000323668 SERPINB2P05120 415 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 PDE6CP51160 858 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 SLC18A3Q16572 532 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 FYB2Q5VWT5 728 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 PAPD7Q5XG87 772 aaKnown RBP16.01■□□□□ 0.15
TCOF1-201ENST00000323668 TYW1Q9NV66 732 aaKnown RBP16.01■□□□□ 0.15
TCOF1-201ENST00000323668 LRRIQ3A6PVS8 624 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-201ENST00000323668 IRAK1P51617 712 aa16.01■□□□□ 0.15
TCOF1-201ENST00000323668 KNOP1Q1ED39 458 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms