RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 ROPN1Q9HAT0 212 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 FOXD4L1Q9NU39 408 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 SLX4Q8IY92 1834 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 O00370 1275 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 GPAA1O43292 621 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 HEXIM1O94992 359 aaKnown RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 PRKAA2P54646 552 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 CCT2P78371 535 aaKnown RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 TSSK1BQ9BXA7 367 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 DNAAF2Q9NVR5 837 aaKnown RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 GGA1Q9UJY5 639 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 POLR2DO15514 142 aaKnown RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 P3H1Q32P28 736 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 TADA2BQ86TJ2 420 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 RSAD2Q8WXG1 361 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 PCDHB15Q9Y5E8 787 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 IRS4O14654 1257 aaPredicted RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 ASNSP08243 561 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 MYL4P12829 197 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 TCIRG1Q13488 830 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 NUDT18Q6ZVK8 323 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 TEX11Q8IYF3 940 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 NHEJ1Q9H9Q4 299 aaPredicted RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 EML4Q9HC35 981 aaKnown RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 SNX14Q9Y5W7 946 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 COMMD10Q9Y6G5 202 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 MXRA7P84157 204 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 DNAL1Q4LDG9 190 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 TTC38Q5R3I4 469 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 DCUN1D2Q6PH85 259 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 RAB44Q7Z6P3 723 aaPredicted RBP4.34□□□□□ -1.72
USH2A-201ENST00000307340 LCA5Q86VQ0 697 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 HDAC7Q8WUI4 952 aa4.34□□□□□ -1.72
USH2A-201ENST00000307340 LAMB4A4D0S4 1761 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PIGBOS1A0A0B4J2F0 54 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 AP1G2O75843 785 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CHEK2O96017 543 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 STX2P32856 288 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CCT5P48643 541 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 FANCCQ00597 558 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 KCNH2Q12809 1159 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 LONRF3Q496Y0 759 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 FOXP4Q8IVH2 680 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 RASEFQ8IZ41 740 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 SLC7A3Q8WY07 619 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 MYD88Q99836 296 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TSPYL2Q9H2G4 693 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 SEPT3Q9UH03 358 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 NEURL1BA8MQ27 555 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 FAM160B1Q5W0V3 765 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 RFX8Q6ZV50 586 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 USP28Q96RU2 1077 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 GPBP1L1Q9HC44 474 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 COPG1Q9Y678 874 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 RBM47A0AV96 593 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 SMIM24O75264 130 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 FMNL1O95466 1100 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 GRIN1Q05586 938 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 RARS2Q5T160 578 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 BLIDQ8IZY5 108 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 ZNF513Q8N8E2 541 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 FANCBQ8NB91 859 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 HELBQ8NG08 1087 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 ATP6V0A4Q9HBG4 840 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 MCF2LO15068 1137 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 STAT2P52630 851 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 AOPEPQ8N6M6 819 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 DIP2CQ9Y2E4 1556 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 YARSP54577 528 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 PDE1BQ01064 536 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 KRT24Q2M2I5 525 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 MUM1Q2TAK8 710 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 IL1RAPL2Q9NP60 686 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 RAB20Q9NX57 234 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 UVRAGQ9P2Y5 699 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 NPEPPSP55786 919 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 HDLBPQ00341 1268 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 CKAP2LQ8IYA6 745 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CPDO75976 1380 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CDH16O75309 829 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 SERPINB6P35237 376 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TNFAIP2Q03169 654 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 RAPGEF1Q13905 1077 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 KRT27Q7Z3Y8 459 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PATL1Q86TB9 770 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 PSMA8Q8TAA3 256 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 FAR2Q96K12 515 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 C2orf40Q9H1Z8 148 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 IFNKQ9P0W0 207 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 MRPS9P82933 396 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 DMTNQ08495 405 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 BYSLQ13895 437 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 PSMD6Q15008 389 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 SNCBQ16143 134 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 NEK10Q6ZWH5 1172 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PARP9Q8IXQ6 854 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 NOA1Q8NC60 698 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 ANAPC5Q9UJX4 755 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 EMILIN1Q9Y6C2 1016 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PNPLA7Q6ZV29 1317 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms