RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SAGE2PA6NJ88 616 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SPDYE3A6NKU9 549 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 FBXL13Q8NEE6 735 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PPP1R13BQ96KQ4 1090 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 TRIM39Q9HCM9 518 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 WARS2Q9UGM6 360 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SUN2Q9UH99 717 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SRRM3A6NNA2 597 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 H0Y3Z8 333 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 FAM13AO94988 1023 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SARM1Q6SZW1 724 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ATP11CQ8NB49 1132 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 B4GALNT2Q8NHY0 566 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ZBTB40Q9NUA8 1239 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SCAF8Q9UPN6 1271 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 VWA5AO00534 786 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PECAM1P16284 738 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 DDIT3P35638 169 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 RPL19P84098 196 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 LRRC36Q1X8D7 754 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ZNF555Q8NEP9 628 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ITFG2Q969R8 447 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 KCNK16Q96T55 309 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 CCDC87Q9NVE4 849 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PPP4R3CPQ6ZMV5 832 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 KRT74Q7RTS7 529 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 NEK8Q86SG6 692 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SNX25Q9H3E2 840 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ADAM30Q9UKF2 790 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SBNO2Q9Y2G9 1366 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 H3BNX3 289 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 MCM7P33993 719 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 DMPKQ09013 629 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PLS1Q14651 629 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ARHGEF25Q86VW2 580 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SYT2Q8N9I0 419 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ARHGEF1Q92888 912 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PRPF18Q99633 342 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 C1orf50Q9BV19 199 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SQORQ9Y6N5 450 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 MTCL1Q9Y4B5 1905 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ASNA1O43681 348 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PDE5AO76074 875 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ATF2P15336 505 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 MAGEA1P43355 309 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 BCAP31P51572 246 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 RAPGEF1Q13905 1077 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SWT1Q5T5J6 900 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 CALML6Q8TD86 181 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PITPNM3Q9BZ71 974 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 STK17AQ9UEE5 414 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 CADP27708 2225 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 NAV3Q8IVL0 2385 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 MIF4GDA9UHW6 222 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 KRT38O76015 456 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 TMPOP42166 694 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 EXOSC9Q06265 439 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 INPP5AQ14642 412 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 UBE2Q1Q7Z7E8 422 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ADCK1Q86TW2 530 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 GPC4O75487 556 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 TOM1L1O75674 476 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 VHLP40337 213 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ABCE1P61221 599 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 RABL6Q3YEC7 729 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SYDE1Q6ZW31 735 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 HAUS7Q99871 368 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 CEP44Q9C0F1 390 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 FAM107AO95990 144 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 UQCRFS1P1P0C7P4 283 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SLC5A1P13866 664 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 AKAP5P24588 427 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ZNF444Q8N0Y2 327 aaPredicted RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ATL2Q8NHH9 583 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 TRPC4APQ8TEL6 797 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 WDR37Q9Y2I8 494 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 NFE2L3Q9Y4A8 694 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ABCA7Q8IZY2 2146 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 RGS12O14924 1447 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 FCGR1AP12314 374 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 RFX1P22670 979 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 DSG1Q02413 1049 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 PPIDQ08752 370 aaKnown RBP5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ZFP1Q6P2D0 407 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ACAD11Q709F0 780 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 CARD10Q9BWT7 1032 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 ABCC2Q92887 1545 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ELL2O00472 640 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 NOP56O00567 594 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 KCNA3P22001 575 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CLCN6P51797 869 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 BYSLQ13895 437 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 BEND3Q5T5X7 828 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 RASSF3Q86WH2 238 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SKAP1Q86WV1 359 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 FAM81AQ8TBF8 368 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 LSG1Q9H089 658 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 BICC1Q9H694 974 aaKnown RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms