RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 CNBD1Q8NA66 436 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 PLBD2Q8NHP8 589 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 L3MBTL3Q96JM7 780 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 TTYH3Q9C0H2 523 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 EPB41L4AQ9HCS5 686 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 TCP11L1Q9NUJ3 509 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 SOS2Q07890 1332 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 CNGA1P29973 690 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 UBE4AQ14139 1066 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 IFI16Q16666 785 aaKnown RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 TSNAXIP1Q2TAA8 658 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 AGBL2Q5U5Z8 902 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 CCDC84Q86UT8 332 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 CDK5RAP3Q96JB5 506 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 STRBPQ96SI9 672 aaKnown RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 TMEM165Q9HC07 324 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 RTN3O95197 1032 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 TUBP50607 506 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 CUL3Q13618 768 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 IL17AQ16552 155 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 INF2Q27J81 1249 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 RASIP1Q5U651 963 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 SYCP3Q8IZU3 236 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 SYNE4Q8N205 404 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 EPAS1Q99814 870 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 RNF26Q9BY78 433 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 TRIM7Q9C029 511 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 GPR108Q9NPR9 543 aa11.1□□□□□ -0.63
CLDN1-201ENST00000295522 ZMYND8Q9ULU4 1186 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-201ENST00000295522 F8VZ95 297 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 TRAF5O00463 557 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 FGFR4P22455 802 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 COPS2P61201 443 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 TMTC2Q8N394 836 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 NUDCD1Q96RS6 583 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 ZMYND12Q9H0C1 365 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 DNAJC17Q9NVM6 304 aaKnown RBP11.09□□□□□ -0.63
CLDN1-201ENST00000295522 ARPP21Q9UBL0 812 aaPredicted RBP11.09□□□□□ -0.63
CLDN1-201ENST00000295522 A0A087X0T9 212 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 FAM228BP0C875 321 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 PLCG1P19174 1290 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 ROR2Q01974 943 aaKnown RBP11.09□□□□□ -0.63
CLDN1-201ENST00000295522 SPTY2D1Q68D10 685 aaPredicted RBP11.09□□□□□ -0.63
CLDN1-201ENST00000295522 KRT28Q7Z3Y7 464 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 TMC3Q7Z5M5 1100 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 NEK9Q8TD19 979 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 EPS8L3Q8TE67 593 aaKnown RBP11.09□□□□□ -0.63
CLDN1-201ENST00000295522 ESR2Q92731 530 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 DHTKD1Q96HY7 919 aaPredicted RBP11.09□□□□□ -0.63
CLDN1-201ENST00000295522 TMEM237Q96Q45 408 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 RGL1Q9NZL6 768 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 ADAM22Q9P0K1 906 aa11.09□□□□□ -0.63
CLDN1-201ENST00000295522 PLEKHG1Q9ULL1 1385 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 C5orf60A6NFR6 353 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 CETN3O15182 167 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 FGGP02679 453 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 VEGFAP15692 232 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 PDE6CP51160 858 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 SCNN1BP51168 640 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 MIIPQ5JXC2 388 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 ARHGAP22Q7Z5H3 698 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 ZC3H18Q86VM9 953 aaKnown RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 NELFCDQ8IXH7 590 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 LCORLQ8N3X6 602 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 SHISA4Q96DD7 197 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 VCXQ9H320 206 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 TBK1Q9UHD2 729 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 INTUQ9ULD6 942 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 SLC12A4Q9UP95 1085 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 USP15Q9Y4E8 981 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 CCDC169A6NNP5 214 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 FOXO6A8MYZ6 492 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 MAP3K13O43283 966 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 FESP07332 822 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 RARAP10276 462 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 KLC1Q07866 573 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 ZNF211Q13398 564 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 SLC29A2Q14542 456 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 LETM2Q2VYF4 491 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 ZNF662Q6ZS27 426 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 MFN1Q8IWA4 741 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 GLG1Q92896 1179 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 ARHGEF2Q92974 986 aaKnown RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 FGD4Q96M96 766 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 PHF20Q9BVI0 1012 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 TMX4Q9H1E5 349 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 KLHL14Q9P2G3 628 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 H0YGN5 161 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 GSTA1P08263 222 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 ZNF268Q14587 947 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 HHATQ5VTY9 493 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 CABP7Q86V35 215 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 GIMAP8Q8ND71 665 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 INPP4AQ96PE3 977 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 RAB17Q9H0T7 212 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 RNF41Q9H4P4 317 aaPredicted RBP11.08□□□□□ -0.64
CLDN1-201ENST00000295522 SLC52A2Q9HAB3 445 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 NFS1Q9Y697 457 aa11.08□□□□□ -0.64
CLDN1-201ENST00000295522 GRID2IPA4D2P6 1211 aa11.07□□□□□ -0.64
CLDN1-201ENST00000295522 ABCB4P21439 1286 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms