RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ZHX2Q9Y6X8 837 aa12.72□□□□□ -0.37
CUX1-202ENST00000292538 ITIH6Q6UXX5 1313 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 PHF20L1A8MW92 1017 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 ENC1O14682 589 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 PRELPP51888 382 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 CBX1P83916 185 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 DCAF17Q5H9S7 520 aaPredicted RBP12.71□□□□□ -0.37
CUX1-202ENST00000292538 TEX35Q5T0J7 233 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 PRPF38AQ8NAV1 312 aaKnown RBP12.71□□□□□ -0.37
CUX1-202ENST00000292538 IL31RAQ8NI17 732 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 SCFD1Q8WVM8 642 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 WNK4Q96J92 1243 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 COL20A1Q9P218 1284 aa12.71□□□□□ -0.37
CUX1-202ENST00000292538 TNS1Q9HBL0 1735 aaKnown RBP12.71□□□□□ -0.37
CUX1-202ENST00000292538 MACROD2A1Z1Q3 448 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 IPO5O00410 1097 aaKnown RBP12.71□□□□□ -0.38
CUX1-202ENST00000292538 NDUFA10O95299 355 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 IPO7O95373 1038 aaKnown RBP12.71□□□□□ -0.38
CUX1-202ENST00000292538 FGFR1OPO95684 399 aaKnown RBP12.71□□□□□ -0.38
CUX1-202ENST00000292538 HMGCS2P54868 508 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 FKBP3Q00688 224 aaKnown RBP12.71□□□□□ -0.38
CUX1-202ENST00000292538 TRIM14Q14142 442 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 GIT2Q14161 759 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 KRT26Q7Z3Y9 468 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 FAM160B2Q86V87 743 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 SLC35F6Q8N357 371 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 CRYGNQ8WXF5 182 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 UBXN4Q92575 508 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 ERO1AQ96HE7 468 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 TCEAL9Q9UHQ7 104 aa12.71□□□□□ -0.38
CUX1-202ENST00000292538 TESPA1A2RU30 521 aaPredicted RBP12.7□□□□□ -0.38
CUX1-202ENST00000292538 GOLGA6L9A6NEM1 432 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 RASSF10A6NK89 507 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 NR2F2P24468 414 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 ZC2HC1CQ53FD0 456 aaPredicted RBP12.7□□□□□ -0.38
CUX1-202ENST00000292538 OTOP1Q7RTM1 612 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 CCDC51Q96ER9 411 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 DRC1Q96MC2 740 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 VAV3Q9UKW4 847 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 CAPN11Q9UMQ6 739 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 PCDHB13Q9Y5F0 798 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 IGLV3-22A0A075B6J6 115 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 PEX10O60683 326 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 FAM13AO94988 1023 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 VCAM1P19320 739 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 NMT1P30419 496 aaKnown RBP12.7□□□□□ -0.38
CUX1-202ENST00000292538 PPP1R2P41236 205 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 LRRC63Q05C16 580 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 PSMD2Q13200 908 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 CCDC122Q5T0U0 273 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 RDH13Q8NBN7 331 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 CCDC42Q96M95 316 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 TEPSINQ96N21 525 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 UNC45AQ9H3U1 944 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 NHEJ1Q9H9Q4 299 aaPredicted RBP12.7□□□□□ -0.38
CUX1-202ENST00000292538 PICK1Q9NRD5 415 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.7□□□□□ -0.38
CUX1-202ENST00000292538 COL4A3BPQ9Y5P4 624 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 DUSP10Q9Y6W6 482 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 ZNF541Q9H0D2 1346 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 FOCADQ5VW36 1801 aa12.7□□□□□ -0.38
CUX1-202ENST00000292538 QSER1Q2KHR3 1735 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 TMEM150BA6NC51 233 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 TBC1D12O60347 775 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 SLITRK3O94933 977 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 MAN2A1Q16706 1144 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 TDRD12Q587J7 1177 aaKnown RBP12.69□□□□□ -0.38
CUX1-202ENST00000292538 FKBP1CQ5VVH2 108 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 WDR59Q6PJI9 974 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 TRPM4Q8TD43 1214 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 ATG4CQ96DT6 458 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 PHLPP2Q6ZVD8 1323 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 MYH7BA7E2Y1 1941 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 A0A1W2PQC6 194 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 ITGB5P18084 799 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 LRRC55Q6ZSA7 311 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 ANKRD13CQ8N6S4 541 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 SYT2Q8N9I0 419 aaPredicted RBP12.69□□□□□ -0.38
CUX1-202ENST00000292538 TAAR1Q96RJ0 339 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 EHMT1Q9H9B1 1298 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 GGA3Q9NZ52 723 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 WRAP73Q9P2S5 460 aaPredicted RBP12.69□□□□□ -0.38
CUX1-202ENST00000292538 SIPA1L1O43166 1804 aa12.69□□□□□ -0.38
CUX1-202ENST00000292538 PIK3CDO00329 1044 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 RPS6P62753 249 aaKnown RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 TRAF1Q13077 416 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 UTP14CQ5TAP6 766 aaKnown RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 MTMR14Q8NCE2 650 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 NEK11Q8NG66 645 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 CCDC43Q96MW1 224 aaKnown RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 KCNH7Q9NS40 1196 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 TBX3O15119 743 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 ICAM1P05362 532 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 CIITAP33076 1130 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 NAP1L1P55209 391 aaKnown RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 PPP2R3AQ06190 1150 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 HYIQ5T013 277 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 MCTP2Q6DN12 878 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 MOXD1Q6UVY6 613 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 MBOAT7Q96N66 472 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms