RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 POTEFA5A3E0 1075 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 GOLGA8KD6RF30 607 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 POTEIP0CG38 1075 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 ZNF76P36508 570 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 CACNB3P54284 484 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 PAK2Q13177 524 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 PRR16Q569H4 304 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 FIGNQ5HY92 759 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 POTEGQ6S5H5 508 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 POTEEQ6S8J3 1075 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 FAM196AQ6ZSG2 479 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 PACS2Q86VP3 889 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 SEPT12Q8IYM1 358 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 BAP1Q92560 729 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 GJD4Q96KN9 370 aaPredicted RBP13.89□□□□□ -0.19
LIG1-201ENST00000263274 RIC8AQ9NPQ8 531 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 PPANQ9NQ55 473 aaKnown RBP13.89□□□□□ -0.19
LIG1-201ENST00000263274 TRPC5Q9UL62 973 aaPredicted RBP13.89□□□□□ -0.19
LIG1-201ENST00000263274 SERPING1P05155 500 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 BANK1Q8NDB2 785 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 BCL9LQ86UU0 1499 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 SLC9A1P19634 815 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 GUCY2CP25092 1073 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 TM4SF1P30408 202 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 KCNH2Q12809 1159 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 DOK7Q18PE1 504 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 OR2W6PQ8NHA6 318 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 UBLCP1Q8WVY7 318 aaPredicted RBP13.89□□□□□ -0.19
LIG1-201ENST00000263274 MTMR9Q96QG7 549 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 PURBQ96QR8 312 aaKnown RBP13.89□□□□□ -0.19
LIG1-201ENST00000263274 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.89□□□□□ -0.192e-7■■■■■ 129.7
LIG1-201ENST00000263274 MTMR4Q9NYA4 1195 aa13.89□□□□□ -0.19
LIG1-201ENST00000263274 ZNF219Q9P2Y4 722 aaPredicted RBP13.89□□□□□ -0.19
LIG1-201ENST00000263274 ERLIN2O94905 339 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 TAL1P17542 331 aaPredicted RBP13.88□□□□□ -0.19
LIG1-201ENST00000263274 PPP4CP60510 307 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 EMBQ6PCB8 327 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 POTEAQ6S8J7 498 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 SLC30A10Q6XR72 485 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 LRRC55Q6ZSA7 311 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 JMJD4Q9H9V9 463 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 USP40Q9NVE5 1235 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 ANKRD36CQ5JPF3 1778 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 DOCK2Q92608 1830 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 BACH1O14867 736 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 CORO7P57737 925 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 PLS1Q14651 629 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 SLF2Q8IX21 1173 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 MSL3Q8N5Y2 521 aaKnown RBP13.88□□□□□ -0.19
LIG1-201ENST00000263274 CEP72Q9P209 647 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 ATP6V0A2Q9Y487 856 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 PCDHA1Q9Y5I3 950 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 BCORQ6W2J9 1755 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 TLR2O60603 784 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 INPP5BP32019 993 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 PSEN1P49768 467 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 CDK17Q00537 523 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 TTMPQ5BVD1 217 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 GOPCQ9HD26 462 aa13.88□□□□□ -0.19
LIG1-201ENST00000263274 CHMP2AO43633 222 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 ABCB4P21439 1286 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 SEC24CP53992 1094 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 TNNC1P63316 161 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 OTUD6BQ8N6M0 293 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 DDX47Q9H0S4 455 aaKnown RBP13.87□□□□□ -0.19
LIG1-201ENST00000263274 DPH5Q9H2P9 285 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 ARMCX3Q9UH62 379 aaPredicted RBP13.87□□□□□ -0.19
LIG1-201ENST00000263274 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.191e-6■■■■□ 25.2
LIG1-201ENST00000263274 MNAT1P51948 309 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 RDH13Q8NBN7 331 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 U2AF1L4Q8WU68 220 aaKnown RBP13.87□□□□□ -0.19
LIG1-201ENST00000263274 IQCDQ96DY2 449 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 HDAC9Q9UKV0 1011 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 BCS1LQ9Y276 419 aa13.87□□□□□ -0.19
LIG1-201ENST00000263274 ZC3H4Q9UPT8 1303 aaKnown RBP13.86□□□□□ -0.19
LIG1-201ENST00000263274 PNMA6FA0A0J9YX94 578 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 SMIM23A6NLE4 172 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 RAD51CO43502 376 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 GCNT3O95395 438 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 RXRBP28702 533 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 ASPRV1Q53RT3 343 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 FBXW10Q5XX13 1052 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 GJB7Q6PEY0 223 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 TADA2BQ86TJ2 420 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 ZNF526Q8TF50 670 aaPredicted RBP13.86□□□□□ -0.19
LIG1-201ENST00000263274 THRAP3Q9Y2W1 955 aaKnown RBP13.86□□□□□ -0.19
LIG1-201ENST00000263274 CAPN7Q9Y6W3 813 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 GPR75-ASB3A0A0A6YYF3 556 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 E7EVH7 732 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 TTLL1O95922 423 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 HGSNATQ68CP4 663 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 ZNF662Q6ZS27 426 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 CASKIN2Q8WXE0 1202 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 SERPINB13Q9UIV8 391 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 EIF3HO15372 352 aaKnown RBP eCLIP13.86□□□□□ -0.19
LIG1-201ENST00000263274 PTK2Q05397 1052 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 PSMD2Q13200 908 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 PDIA5Q14554 519 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 EXOC3L4Q17RC7 722 aa13.86□□□□□ -0.19
LIG1-201ENST00000263274 PEX26Q7Z412 305 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms