RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NOX5Q96PH1 765 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 EPB41L5Q9HCM4 733 aa23.49■■□□□ 1.35
TRIM28-201ENST00000253024 GOLGA6CA6NDK9 693 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 GOLGA6DP0CG33 693 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 CASP4P49662 377 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 GABPAQ06546 454 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 SFR1Q86XK3 245 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 PURBQ96QR8 312 aaKnown RBP23.48■■□□□ 1.35
TRIM28-201ENST00000253024 ANO3Q9BYT9 981 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 GOLGA6AQ9NYA3 693 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 NAV1Q8NEY1 1877 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 LRRC63Q05C16 580 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 KCNH2Q12809 1159 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 ADAT2Q7Z6V5 191 aaKnown RBP23.48■■□□□ 1.35
TRIM28-201ENST00000253024 SLF2Q8IX21 1173 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 TSGA10Q9BZW7 698 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 MYH1P12882 1939 aa23.48■■□□□ 1.35
TRIM28-201ENST00000253024 WNK3Q9BYP7 1800 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 CYP11B2P19099 503 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 ARSHQ5FYA8 562 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 HAUS3Q68CZ6 603 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 SLFN13Q68D06 897 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 RDH13Q8NBN7 331 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 SPAG5Q96R06 1193 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 SH2D3AQ9BRG2 576 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 AP1M1Q9BXS5 423 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 FEZ2Q9UHY8 353 aaPredicted RBP23.47■■□□□ 1.35
TRIM28-201ENST00000253024 TMEM119Q4V9L6 283 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 CATSPER3Q86XQ3 398 aa23.47■■□□□ 1.35
TRIM28-201ENST00000253024 ZC3H4Q9UPT8 1303 aaKnown RBP23.47■■□□□ 1.35
TRIM28-201ENST00000253024 A0A1W2PQJ5 194 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 BHMT2Q9H2M3 363 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 SAMM50Q9Y512 469 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 GAKO14976 1311 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 FGFR1OPO95684 399 aaKnown RBP23.46■■□□□ 1.35
TRIM28-201ENST00000253024 CCDC65Q8IXS2 484 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 TBC1D22AQ8WUA7 517 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 TMEM51Q9NW97 253 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 ANO9A1A5B4 782 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 HLA-DOAP06340 250 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 CTTNQ14247 550 aaKnown RBP23.46■■□□□ 1.35
TRIM28-201ENST00000253024 DDX42Q86XP3 938 aaKnown RBP eCLIP23.46■■□□□ 1.35
TRIM28-201ENST00000253024 SEPT12Q8IYM1 358 aa23.46■■□□□ 1.35
TRIM28-201ENST00000253024 ESYT2A0FGR8 921 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 ZEB2O60315 1214 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 ZNF76P36508 570 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 SF3A3Q12874 501 aaKnown RBP eCLIP23.45■■□□□ 1.347e-7■■■■□ 24.6
TRIM28-201ENST00000253024 NAA35Q5VZE5 725 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 NRAPQ86VF7 1730 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 FAM86B1E9PN63 330 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 KCNK3O14649 394 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 TOM1O60784 492 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 HEXIM1O94992 359 aaKnown RBP23.45■■□□□ 1.34
TRIM28-201ENST00000253024 FAM86B2P0C5J1 330 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 PDIA5Q14554 519 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 CRY2Q49AN0 593 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 APOBEC3HQ6NTF7 200 aaKnown RBP23.45■■□□□ 1.34
TRIM28-201ENST00000253024 REEP2Q9BRK0 252 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 FAM107BQ9H098 131 aa23.45■■□□□ 1.34
TRIM28-201ENST00000253024 AJAP1Q9UKB5 411 aaPredicted RBP23.45■■□□□ 1.34
TRIM28-201ENST00000253024 BBOX1O75936 387 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 GCNT3O95395 438 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 PTK2Q05397 1052 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 RUFY1Q96T51 708 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 MED4Q9NPJ6 270 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 CWC15Q9P013 229 aaKnown RBP23.44■■□□□ 1.34
TRIM28-201ENST00000253024 JAG1P78504 1218 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 CERKLQ49MI3 558 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-201ENST00000253024 ZC2HC1CQ53FD0 456 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-201ENST00000253024 SEPT11Q9NVA2 429 aaKnown RBP23.44■■□□□ 1.34
TRIM28-201ENST00000253024 CHORDC1Q9UHD1 332 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-201ENST00000253024 HDAC9Q9UKV0 1011 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 FAM184BQ9ULE4 1060 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 RREB1Q92766 1687 aa23.44■■□□□ 1.34
TRIM28-201ENST00000253024 CCT5P48643 541 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 HLTFQ14527 1009 aaKnown RBP eCLIP23.43■■□□□ 1.34
TRIM28-201ENST00000253024 FIGNQ5HY92 759 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 FAM76AQ8TAV0 307 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 BBXQ8WY36 941 aaPredicted RBP23.43■■□□□ 1.34
TRIM28-201ENST00000253024 TEKT1Q969V4 418 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 CCDC43Q96MW1 224 aaKnown RBP23.43■■□□□ 1.34
TRIM28-201ENST00000253024 STIM2Q9P246 746 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 ARHGAP4P98171 946 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 ZCWPW2Q504Y3 356 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 FNBP4Q8N3X1 1017 aaPredicted RBP23.43■■□□□ 1.34
TRIM28-201ENST00000253024 SBF2Q86WG5 1849 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 DDX39AO00148 427 aaKnown RBP23.43■■□□□ 1.34
TRIM28-201ENST00000253024 LLGL1Q15334 1064 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 ASIC2Q16515 512 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 IQCEQ6IPM2 695 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 SRLQ86TD4 932 aa23.43■■□□□ 1.34
TRIM28-201ENST00000253024 SNHG28P0DPA3 235 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 CRKP46108 304 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 PDCLQ13371 301 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 TRIM31Q9BZY9 425 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 CFBP00751 764 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 COG2Q14746 738 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 ASTE1Q2TB18 679 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-201ENST00000253024 PPP4R3AQ6IN85 833 aa23.42■■□□□ 1.34
TRIM28-201ENST00000253024 CCDC174Q6PII3 467 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms