RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LRRC1Q9BTT6 524 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 LSM14BQ9BX40 385 aaKnown RBP18.1■□□□□ 0.49
HOXD3-201ENST00000249440 KCTD10Q9H3F6 313 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 G3V3G9 751 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 NFIAQ12857 509 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 AP3B2Q13367 1082 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 ADAM9Q13443 819 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 DOK7Q18PE1 504 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 DCAF8Q5TAQ9 597 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 GPIHBP1Q8IV16 184 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 AENQ8WTP8 325 aaKnown RBP18.1■□□□□ 0.49
HOXD3-201ENST00000249440 GDAP1L1Q96MZ0 367 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 FGFBP2Q9BYJ0 223 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 ZC3H4Q9UPT8 1303 aaKnown RBP18.09■□□□□ 0.49
HOXD3-201ENST00000249440 FRMD3A2A2Y4 597 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 IVLP07476 585 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 CXCR5P32302 372 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 EPS15P42566 896 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 CDC37Q16543 378 aaPredicted RBP18.09■□□□□ 0.49
HOXD3-201ENST00000249440 EDRF1Q3B7T1 1238 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 MCTP2Q6DN12 878 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 ILDR2Q71H61 639 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 GSPT2Q8IYD1 628 aaKnown RBP18.09■□□□□ 0.49
HOXD3-201ENST00000249440 MBOAT7Q96N66 472 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 DHX36Q9H2U1 1008 aaKnown RBP18.09■□□□□ 0.49
HOXD3-201ENST00000249440 RNF14Q9UBS8 474 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 NPHP3-ACAD11A0A0J9YXS1 232 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 CETN3O15182 167 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 TLR2O60603 784 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 RPS6KA5O75582 802 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 PRPF6O94906 941 aaKnown RBP18.09■□□□□ 0.49
HOXD3-201ENST00000249440 CACNB1Q02641 598 aaPredicted RBP18.09■□□□□ 0.49
HOXD3-201ENST00000249440 KLHDC7AQ5VTJ3 777 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 AFAP1L1Q8TED9 768 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 PSMB7Q99436 277 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 TLR10Q9BXR5 811 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 KANSL2Q9H9L4 492 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 NYAP2Q9P242 653 aa18.09■□□□□ 0.49
HOXD3-201ENST00000249440 ADAMTSL1Q8N6G6 1762 aa18.08■□□□□ 0.49
HOXD3-201ENST00000249440 BUB1O43683 1085 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 MED24O75448 989 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 EEF2P13639 858 aaKnown RBP18.08■□□□□ 0.48
HOXD3-201ENST00000249440 GGCXP38435 758 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 MATR3P43243 847 aaKnown RBP eCLIP18.08■□□□□ 0.48
HOXD3-201ENST00000249440 SLC12A3P55017 1021 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 RAD51AP2Q09MP3 1159 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 SLC18A3Q16572 532 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 CFAP221Q4G0U5 840 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 SLFN13Q68D06 897 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 ZC3H3Q8IXZ2 948 aaKnown RBP18.08■□□□□ 0.48
HOXD3-201ENST00000249440 ERMNQ8TAM6 284 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 UIMC1Q96RL1 719 aa18.08■□□□□ 0.48
HOXD3-201ENST00000249440 TULP2O00295 520 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 CRKP46108 304 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 CERKLQ49MI3 558 aaPredicted RBP18.07■□□□□ 0.48
HOXD3-201ENST00000249440 UPF1Q92900 1129 aaKnown RBP eCLIP18.07■□□□□ 0.48
HOXD3-201ENST00000249440 TMX4Q9H1E5 349 aaPredicted RBP18.07■□□□□ 0.48
HOXD3-201ENST00000249440 ZHX3Q9H4I2 956 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 DNAJC18Q9H819 358 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 AIPL1Q9NZN9 384 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 DMGDHQ9UI17 866 aaKnown RBP18.07■□□□□ 0.48
HOXD3-201ENST00000249440 GOLGA6BA6NDN3 693 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 MEIS2O14770 477 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 TBX3O15119 743 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 NCK2O43639 380 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 ARSHQ5FYA8 562 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 HDAC7Q8WUI4 952 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 TBC1D5Q92609 795 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 STIM2Q9P246 746 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 PI4KBQ9UBF8 816 aa18.07■□□□□ 0.48
HOXD3-201ENST00000249440 ALDH1B1P30837 517 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 STAT3P40763 770 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 ARHGAP4P98171 946 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 KCNH2Q12809 1159 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 RAPGEF1Q13905 1077 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 NAB2Q15742 525 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 GLE1Q53GS7 698 aaKnown RBP18.06■□□□□ 0.48
HOXD3-201ENST00000249440 CATSPER3Q86XQ3 398 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 ZFPM1Q8IX07 1006 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 ZDHHC15Q96MV8 337 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 DNM3Q9UQ16 869 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 STK24Q9Y6E0 443 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 ANKRD31Q8N7Z5 1873 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 POTEFA5A3E0 1075 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 POTEIP0CG38 1075 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 SLURP2P0DP57 97 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 NPR1P16066 1061 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 NR2F2P24468 414 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 KLHL30Q0D2K2 578 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 PRR16Q569H4 304 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 POTEGQ6S5H5 508 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 POTEEQ6S8J3 1075 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 ETNPPLQ8TBG4 499 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 CRYGNQ8WXF5 182 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.06■□□□□ 0.48
HOXD3-201ENST00000249440 AMNQ9BXJ7 453 aa18.06■□□□□ 0.48
HOXD3-201ENST00000249440 AGPSO00116 658 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 RPA1P27694 616 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 EPHB4P54760 987 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 SPIRE1Q08AE8 756 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms