RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 LRMPQ12912 555 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 PLS1Q14651 629 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 FILIP1LQ4L180 1135 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 GUF1Q8N442 669 aaKnown RBP16.57■□□□□ 0.24
CCDC47-201ENST00000225726 CHST13Q8NET6 341 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 NEK9Q8TD19 979 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 HPS3Q969F9 1004 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 RGL1Q9NZL6 768 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 ADD3Q9UEY8 706 aaKnown RBP16.57■□□□□ 0.24
CCDC47-201ENST00000225726 MTMR1Q13613 665 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 TCP11X2Q5H9J9 407 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 LBX2Q6XYB7 198 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 FRMD3A2A2Y4 597 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 KCNJ18B7U540 433 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 SLITRK3O94933 977 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 MYCLP12524 364 aaPredicted RBP16.57■□□□□ 0.24
CCDC47-201ENST00000225726 PABPC4Q13310 644 aaKnown RBP eCLIP16.57■□□□□ 0.244e-7■■■■□ 21.4
CCDC47-201ENST00000225726 KCNJ12Q14500 433 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 ARSHQ5FYA8 562 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 KIAA1524Q8TCG1 905 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 DUSP9Q99956 384 aaKnown RBP16.57■□□□□ 0.24
CCDC47-201ENST00000225726 CYP39A1Q9NYL5 469 aa16.57■□□□□ 0.24
CCDC47-201ENST00000225726 LRRC10BA6NIK2 292 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 KRT18P05783 430 aaKnown RBP16.56■□□□□ 0.24
CCDC47-201ENST00000225726 CTTNQ14247 550 aaKnown RBP16.56■□□□□ 0.24
CCDC47-201ENST00000225726 ARID5BQ14865 1188 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 KRT31Q15323 416 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 CENPPQ6IPU0 288 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 TPH2Q8IWU9 490 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 NSUN6Q8TEA1 469 aaKnown RBP16.56■□□□□ 0.24
CCDC47-201ENST00000225726 TBC1D22BQ9NU19 505 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 LOXHD1Q8IVV2 1947 aa16.56■□□□□ 0.24
CCDC47-201ENST00000225726 NPHP3-ACAD11A0A0J9YXS1 232 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 DHX15O43143 795 aaKnown RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 FAM26FQ5R3K3 315 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 ANKRD40Q6AI12 368 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 A1CFQ9NQ94 594 aaKnown RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 EEF1GP26641 437 aaKnown RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 IRX3P78415 501 aaPredicted RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 ITGB3BPQ13352 177 aaPredicted RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 VSIG10LQ86VR7 867 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 PURBQ96QR8 312 aaKnown RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 SRRTQ9BXP5 876 aaKnown RBP16.55■□□□□ 0.24
CCDC47-201ENST00000225726 AGTPBP1Q9UPW5 1226 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 GIT2Q14161 759 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 LDLRAD1Q5T700 205 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 SPECC1LQ69YQ0 1117 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 ARMCX5Q6P1M9 558 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 FOXR2Q6PJQ5 311 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 MIER3Q7Z3K6 550 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 IRF2BP1Q8IU81 584 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 RIOX2Q8IUF8 465 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 CSGALNACT2Q8N6G5 542 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 OPTNQ96CV9 577 aa16.55■□□□□ 0.24
CCDC47-201ENST00000225726 UTRNP46939 3433 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 NR3C2P08235 984 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 SFPQP23246 707 aaKnown RBP eCLIP16.54■□□□□ 0.24
CCDC47-201ENST00000225726 COPB1P53618 953 aaKnown RBP16.54■□□□□ 0.24
CCDC47-201ENST00000225726 TBX2Q13207 712 aaPredicted RBP16.54■□□□□ 0.24
CCDC47-201ENST00000225726 FAM114A1Q8IWE2 563 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 GPRASP2Q96D09 838 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 NACC1Q96RE7 527 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 BHMT2Q9H2M3 363 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 SEMA6BQ9H3T3 888 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 FBXO40Q9UH90 709 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 PCDHA2Q9Y5H9 948 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 LCTP09848 1927 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 PKD2L1Q9P0L9 805 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 BTBD7Q9P203 1132 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 MAGEC2Q9UBF1 373 aaPredicted RBP16.54■□□□□ 0.24
CCDC47-201ENST00000225726 CLEC11AQ9Y240 323 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 UNCXA6NJT0 531 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 DDX39AO00148 427 aaKnown RBP16.54■□□□□ 0.24
CCDC47-201ENST00000225726 CCZ1BP86790 482 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 CCZ1P86791 482 aaPredicted RBP16.54■□□□□ 0.24
CCDC47-201ENST00000225726 NLRX1Q86UT6 975 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 MYOCDQ8IZQ8 938 aa16.54■□□□□ 0.24
CCDC47-201ENST00000225726 PBX1P40424 430 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 LRRC63Q05C16 580 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 HERC4Q5GLZ8 1057 aaPredicted RBP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 FASTKD5Q7L8L6 764 aaKnown RBP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 REEP2Q9BRK0 252 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 ASCC2Q9H1I8 757 aaPredicted RBP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 SPTLC3Q9NUV7 552 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 PFASO15067 1338 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 TEX33O43247 280 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 STAM2O75886 525 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 NOLC1Q14978 699 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 LXNQ9BS40 222 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 TESPA1A2RU30 521 aaPredicted RBP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 MAFGO15525 162 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 KIF20AO95235 890 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 CACNB1Q02641 598 aaPredicted RBP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 MOGSQ13724 837 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 INPP4AQ96PE3 977 aaPredicted RBP16.53■□□□□ 0.24
CCDC47-201ENST00000225726 TSG101Q99816 390 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 TAB2Q9NYJ8 693 aa16.53■□□□□ 0.24
CCDC47-201ENST00000225726 N4BP3O15049 544 aa16.52■□□□□ 0.24
CCDC47-201ENST00000225726 P4HBP07237 508 aaKnown RBP16.52■□□□□ 0.24
CCDC47-201ENST00000225726 SKILP12757 684 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms